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(-) Description

Title :  CRYSTAL STRUCTURE OF S. AUREUS FABI (P43212)
 
Authors :  J. Schiebel, C. Kisker
Date :  04 Mar 12  (Deposition) - 09 May 12  (Release) - 23 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Oxidoreductase, Short-Chain Dehydrogenase/Reductase Superfamily, Fatty Acid Biosynthesis, Lipid Synthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Schiebel, A. Chang, H. Lu, M. V. Baxter, P. J. Tonge, C. Kisker
Staphylococcus Aureus Fabi: Inhibition, Substrate Recognition And Potential Implications For In Vivo Essentiality
Structure V. 20 802 2012
PubMed-ID: 22579249  |  Reference-DOI: 10.1016/J.STR.2012.03.013

(-) Compounds

Molecule 1 - ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADPH]
    Chains: A, B, C, D
    EC Number: 1.3.1.10
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETM-11
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 1280
    Strain: N315
    Synonym: ENR, ENOYL-ACP REDUCTASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 13)

Asymmetric/Biological Unit (1, 13)
No.NameCountTypeFull Name
1SO413Ligand/IonSULFATE ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR B:39 , ARG B:40 , LYS B:41 , SER B:44 , ASN B:98BINDING SITE FOR RESIDUE SO4 B1250
02AC2SOFTWAREALA A:15 , ARG A:40 , LYS A:41 , SER A:44BINDING SITE FOR RESIDUE SO4 A1252
03AC3SOFTWAREARG D:40 , LYS D:41 , SER D:44 , ASN D:98BINDING SITE FOR RESIDUE SO4 D1257
04AC4SOFTWAREARG D:184 , LEU D:234 , ASP D:236 , SER D:239BINDING SITE FOR RESIDUE SO4 D1258
05AC5SOFTWARETYR C:-4 , ASN C:-6 , LYS D:26 , VAL D:224BINDING SITE FOR RESIDUE SO4 D1259
06AC6SOFTWAREARG A:18 , TYR A:147 , GLY A:149 , GLY A:150 , ARG A:219 , HOH A:2045BINDING SITE FOR RESIDUE SO4 A1253
07AC7SOFTWARESER A:19 , ILE A:20 , ARG A:219 , HOH A:2012BINDING SITE FOR RESIDUE SO4 A1254
08AC8SOFTWAREHIS A:130 , LYS A:133 , ASP A:177 , LEU A:178 , THR B:109BINDING SITE FOR RESIDUE SO4 A1255
09AC9SOFTWAREARG B:214 , ARG D:40 , GLU D:100BINDING SITE FOR RESIDUE SO4 D1260
10BC1SOFTWARELYS C:164 , GLU C:168 , SER C:189 , ASN C:245 , HIS C:247BINDING SITE FOR RESIDUE SO4 C1251
11BC2SOFTWAREARG B:194 , ASN B:245 , HOH B:2035BINDING SITE FOR RESIDUE SO4 B1251
12BC3SOFTWAREGLU A:108 , SER A:110 , HOH A:2034 , TYR B:123 , ILE B:127BINDING SITE FOR RESIDUE SO4 B1252
13BC4SOFTWAREPRO B:216 , LYS B:218BINDING SITE FOR RESIDUE SO4 B1253

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ALM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ALM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ALM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ALM)

(-) Exons   (0, 0)

(no "Exon" information available for 4ALM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:264
 aligned with A0A0H3JLH9_S | A0A0H3JLH9 from UniProtKB/TrEMBL  Length:256

    Alignment length:269
                                              1                                                                                                                                                                                                                                                          
                                     -        |2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242         
         A0A0H3JLH9_S     - ------------------MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIEERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSG 251
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...................eeeee......hhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhh......eee....hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee........-----..hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.....eeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4alm A -17 PMSDYDIPTTENLYFQGAMVNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSA-----FNTILKEIEERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSG 251
                                    -8         2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192     |   - |     212       222       232       242         
                                                                                                                                                                                                                                                 198   204                                               


Chain B from PDB  Type:PROTEIN  Length:242
 aligned with A0A0H3JLH9_S | A0A0H3JLH9 from UniProtKB/TrEMBL  Length:256

    Alignment length:255
                                  1                                                                                                                                                                                                                                                        
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244     
         A0A0H3JLH9_S     - ------MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIEERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVD 249
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeee.......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh......eee....hhhhhhhhhhhhhhhhh...eeee..hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..-----.....hhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....--------hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4alm B  -5 LYFQGAMVNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTY-----AVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIR--------GFNTILKEIEERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVD 249
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134       144  |    154       164       174       184       194       204       214       224       234       244     
                                                                                                                                                                                  147   153                                      194      203                                              


Chain C from PDB  Type:PROTEIN  Length:224
 aligned with A0A0H3JLH9_S | A0A0H3JLH9 from UniProtKB/TrEMBL  Length:256

    Alignment length:257
                                   1                                                                                                                                                                                                                                                         
                                   | 3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       
         A0A0H3JLH9_S     - -------MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIEERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDS 250
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeee......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh......eee....hhhhhhhhhhhhhhhhh...eeeee..------------..hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.--------..hhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.-------------.hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.....eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4alm C  -6 NLYFQGAMVNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIA------------ETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTY--------NYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAG-------------NTILKEIEERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDS 250
                                     3        13        23        33        43        53        63        73        83        93 |       -    |  113       123       133       143   |     -  |    163       173       183       | -         - |     213       223       233       243       
                                                                                                                                95          108                                    147      156                                191           205                                             


Chain D from PDB  Type:PROTEIN  Length:246
 aligned with A0A0H3JLH9_S | A0A0H3JLH9 from UniProtKB/TrEMBL  Length:256

    Alignment length:259
                               1                                                                                                                                                                                                                                                               
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247         
         A0A0H3JLH9_S     - ---MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIEERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSGFHAIK 256
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeee.......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhh...eeee.........----....hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee...---....hhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.....------.....hhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4alm D  -2 QGAMVNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMED----FSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGG---VQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRT------GGFNTILKEIEERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSGFHAIK 256
                                     7        17        27        37        47        57        67        77        87        97   |   107       117       127       137       147  |   |157       167       177       187       | -    |  207       217       227       237       247         
                                                                                                                                 101  106                                         150 154                                      195    202
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ALM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ALM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ALM)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  4alm
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  A0A0H3JLH9_S | A0A0H3JLH9
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0H3JLH9_S | A0A0H3JLH9: 4ali 4alj 4alk 4all 4aln 4bnf 4bng 4bnh 4bni 4bnj 4bnk 4bnl 4bnm 4bnn 4cuz 4cv0 4cv1

(-) Related Entries Specified in the PDB File

4ali CRYSTAL STRUCTURE OF S. AUREUS FABI IN COMPLEX WITH NADP AND TRICLOSAN (P1)
4alj CRYSTAL STRUCTURE OF S. AUREUS FABI IN COMPLEX WITH NADP AND 5-CHLORO-2-PHENOXYPHENOL
4alk CRYSTAL STRUCTURE OF S. AUREUS FABI IN COMPLEX WITH NADP AND 5-ETHYL-2-PHENOXYPHENOL
4all CRYSTAL STRUCTURE OF S. AUREUS FABI IN COMPLEX WITH NADP AND TRICLOSAN (P212121)
4aln CRYSTAL STRUCTURE OF S. AUREUS FABI (P32)