4AI1 - JenaLib

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:160 , ASP A:161 , ASN A:224 , VAL A:226 , TRP A:228 , HOH A:2232 , HOH A:2234 , HOH A:2287	BINDING SITE FOR RESIDUE GD A1272
02	AC2	SOFTWARE	ASP A:78 , ASP A:245 , GD A:1277 , HOH A:2121 , HOH A:2123 , HOH A:2124 , HOH A:2140	BINDING SITE FOR RESIDUE GD A1273
03	AC3	SOFTWARE	ASP A:82 , ASP A:125 , GD A:1275 , GD A:1276 , GD A:1279 , HOH A:2132 , HOH A:2134 , HOH A:2141	BINDING SITE FOR RESIDUE GD A1274
04	AC4	SOFTWARE	ASP A:125 , GD A:1274 , GD A:1276 , HOH A:2141 , HOH A:2201 , HOH A:2202 , HOH A:2336	BINDING SITE FOR RESIDUE GD A1275
05	AC5	SOFTWARE	GD A:1274 , GD A:1275 , GD A:1279 , HOH A:2123 , HOH A:2140 , HOH A:2141 , HOH A:2336	BINDING SITE FOR RESIDUE GD A1276
06	AC6	SOFTWARE	GD A:1273 , HOH A:2124 , HOH A:2302	BINDING SITE FOR RESIDUE GD A1277
07	AC7	SOFTWARE	ASP A:78 , HOH A:2123 , HOH A:2124	BINDING SITE FOR RESIDUE GD A1278
08	AC8	SOFTWARE	ASP A:125 , GD A:1274 , GD A:1276 , HOH A:2134	BINDING SITE FOR RESIDUE GD A1279
09	AC9	SOFTWARE	GLU A:236 , HOH A:2289 , HOH A:2291	BINDING SITE FOR RESIDUE GD A1280
10	BC1	SOFTWARE	GLU A:179 , HOH A:2246 , HOH A:2247 , HOH A:2249 , HOH A:2337	BINDING SITE FOR RESIDUE GD A1281
11	BC2	SOFTWARE	SER A:170 , GLU A:174 , HOH A:2022 , HOH A:2237 , HOH A:2240	BINDING SITE FOR RESIDUE GD A1282
12	BC3	SOFTWARE	ASP A:82 , HOH A:2136 , HOH A:2145	BINDING SITE FOR RESIDUE GD A1283
13	BC4	SOFTWARE	TYR A:102 , CYS A:107 , GLY A:109 , GLY A:111	BINDING SITE FOR RESIDUE CL A1284
14	BC5	SOFTWARE	PHE A:94 , PRO A:95 , HOH A:2144	BINDING SITE FOR RESIDUE CL A1285
15	BC6	SOFTWARE	LEU A:30 , ALA A:212 , GLY A:213 , TYR A:214	BINDING SITE FOR RESIDUE GOL A1286
16	BC7	SOFTWARE	ASN A:104 , CYS A:113 , ASN A:115 , HIS A:271 , HOH A:2174 , HOH A:2176 , HOH A:2187 , HOH A:2339	BINDING SITE FOR RESIDUE GOL A1287

SS Bonds (4, 4)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:258
 aligned with FLO5_YEAST | P38894 from UniProtKB/Swiss-Prot  Length:1075

    Alignment length:258
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263        
           FLO5_YEAST    14 AFLALINVASGATEACLPAGQRKSGMNINFYQYSLKDSSTYSNAAYMAYGYASKTKLGSVGGQTDISIDYNIPCVSSSGTFPCPQEDSYGNWGCKGMGACSNSQGIAYWSTDLFGFYTTPTNVTLEMTGYFLPPQTGSYTFSFATVDDSAILSVGGSIAFECCAQEQPPITSTNFTINGIKPWDGSLPDNITGTVYMYAGYYYPLKVVYSNAVSWGTLPISVELPDGTTVSDNFEGYVYSFDDDLSQSNCTIPDPSIH 271
               SCOP domains d4ai1a_ A: automated matches                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhh...ee......ee.eeeeeee......hhhhhhhhhhhhhhhh.eeeeeeee....eee..eeee..eeee.hhh.ee...ee...ee.......................eeeeeeeee.....eeeeeee.....eeeeee......................eee...........eeeeeee.....eeeeeeeee....eee.eeee.....eee......eee..........ee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------PA14  PDB: A:74-249 UniProt: 74-249                                                                                                                                             ---------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ai1 A  14 GLVPRGSHMSGATEACLPAGQRKSGMNINFYQYSLKDSSTYSNAAYMAYGYASKTKLGSVGGQTDISIDYNIPCVSSSGTFPCPQEDSYGNWGCKGMGACSNSQGIAYWSTDLFGFYTTPTNVTLEMTGYFLPPQTGSYTFSFATVDDSAILSVGGSIAFECCAQEQPPITSTNFTINGIKPWDGSLPDNITGTVYMYAGYYYPLKVVYSNAVSWGTLPISVELPDGTTVSDNFEGYVYSFDDDLSQSNCTIPDPSIH 271
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (FLO5_YEAST | P38894)

molecular function
	GO:0005537	mannose binding	Interacting selectively and non-covalently with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans.
biological process
	GO:0031589	cell-substrate adhesion	The attachment of a cell to the underlying substrate via adhesion molecules.
	GO:0036281	coflocculation	The non-sexual aggregation between single-celled organisms of different species.
	GO:0000128	flocculation	The reversible, non-sexual aggregation of single-celled organisms in suspension to form aggregates of many cells known as flocs.
	GO:0000501	flocculation via cell wall protein-carbohydrate interaction	The reversible, non-sexual aggregation of cells mediated by the binding of proteins in the cell wall of one cell to carbohydrates in the cell wall of another cell. An example of this process is found in Saccharomyces cerevisiae, in which it is pH- and calcium-dependent.
cellular component
	GO:0031225	anchored component of membrane	The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
	GO:0005618	cell wall	The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0009277	fungal-type cell wall	A rigid yet dynamic structure surrounding the plasma membrane that affords protection from stresses and contributes to cell morphogenesis, consisting of extensively cross-linked glycoproteins and carbohydrates. The glycoproteins may be modified with N- or O-linked carbohydrates, or glycosylphosphatidylinositol (GPI) anchors; the polysaccharides are primarily branched glucans, including beta-linked and alpha-linked glucans, and may also include chitin and other carbohydrate polymers, but not cellulose or pectin. Enzymes involved in cell wall biosynthesis are also found in the cell wall. Note that some forms of fungi develop a capsule outside of the cell wall under certain circumstances; this is considered a separate structure.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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	Cis Peptide Bonds
		Asn A:104 - Trp A:105	[ RasMol ]
		Asp A:160 - Asp A:161	[ RasMol ]

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	4ai1
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	FLO5_YEAST \| P38894
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Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

2xjp	X-RAY STRUCTURE OF THE N-TERMINAL DOMAIN OF THE FLOCCULIN FLO5 FROM SACCHAROMYCES CEREVISIAE IN COMPLEX WITH CALCIUM AND MANNOSE
2xjq	X-RAY STRUCTURE OF THE N-TERMINAL DOMAIN OF THE FLOCCULIN FLO5 FROM SACCHAROMYCES CEREVISIAE
2xjr	X-RAY STRUCTURE OF THE N-TERMINAL DOMAIN OF THE FLOCCULIN FLO5 FROM SACCHAROMYCES CEREVISIAE IN COMPLEX WITH CALCIUM AND MAN5(D2-D3)
2xjs	X-RAY STRUCTURE OF THE N-TERMINAL DOMAIN OF THE FLOCCULIN FLO5 FROM SACCHAROMYCES CEREVISIAE IN COMPLEX WITH CALCIUM AND A1,2-MANNOBIOSE
2xjt	X-RAY STRUCTURE OF THE N-TERMINAL DOMAIN OF THE FLOCCULIN FLO5 FROM SACCHAROMYCES CEREVISIAE IN COMPLEX WITH CALCIUM AND MAN5(D1)
2xju	X-RAY STRUCTURE OF THE N-TERMINAL DOMAIN OF THE FLOCCULIN FLO5 FROM SACCHAROMYCES CEREVISIAE WITH MUTATION S227A IN COMPLEX WITH CALCIUM AND A1,2-MANNOBIOSE
2xjv	X-RAY STRUCTURE OF THE N-TERMINAL DOMAIN OF THE FLOCCULIN FLO5 FROM SACCHAROMYCES CEREVISIAE WITH MUTATION D201T IN COMPLEX WITH CALCIUM AND GLUCOSE
4ahw	FLO5A SHOWING A HEPTANUCLEAR GADOLINIUM CLUSTER ON ITS SURFACE
4ahx	FLO5A SHOWING A TRINUCLEAR GADOLINIUM CLUSTER ON ITS SURFACE
4ahy	FLO5A COCRYSTALLIZED WITH 3 MM GDAC3
4ahz	FLO5A SHOWING A HEPTANUCLEAR GADOLINIUM CLUSTER ON ITS SURFACE AFTER 60 MIN OF SOAKING
4ai0	FLO5A SHOWING A HEPTANUCLEAR GADOLINIUM CLUSTER ON ITS SURFACE AFTER 9 MIN OF SOAKING
4ai2	FLO5A SHOWING A HEPTANUCLEAR GADOLINIUM CLUSTER ON ITS SURFACE AFTER 41 MIN OF SOAKING
4ai3	FLO5A SHOWING A HEPTANUCLEAR GADOLINIUM CLUSTER ON ITS SURFACE AFTER 60 MIN OF SOAKING

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 16)

Sites (16, 16)