4AH4 - JenaLib

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Title :   CRYSTAL STRUCTURE OF FUCOSE BINDING LECTIN FROM ASPERGILLUS FUMIGATUS (AFL) IN COMPLEX WITH BGA OLIGOSACCHARIDE.

Authors :   J. Houser, J. Komarek, N. Kostlanova, M. Lahmann, G. Cioci, A. Varrot, A M. Wimmerova

Date :   03 Feb 12 (Deposition) - 20 Feb 13 (Release) - 25 Mar 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.75

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Houser, J. Komarek, G. Cioci, A. Varrot, A. Imberty, M. Wimmerova
Structural Insights Into Aspergillus Fumigatus Lectin Specificity: Afl Binding Sites Are Functionally Non-Equivalent
Acta Crystallogr. , Sect. D V. 71 442 2015
PubMed-ID: 25760594 | Reference-DOI: 10.1107/S1399004714026595

Molecule 1 - FUCOSE-SPECIFIC LECTIN FLEA
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Organism Scientific	:	ASPERGILLUS FUMIGATUS
	Organism Taxid	:	5085
	Synonym	:	FUCOSE SPECIFIC LECTIN AFL

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 33)

No.	Name	Count	Type	Full Name
1	A2G	9	Ligand/Ion	N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2	CL	1	Ligand/Ion	CHLORIDE ION
3	CSD	2	Mod. Amino Acid	3-SULFINOALANINE
4	FUC	12	Ligand/Ion	ALPHA-L-FUCOSE
5	GAL	9	Ligand/Ion	BETA-D-GALACTOSE

Biological Unit 1 (4, 17)

No.	Name	Count	Type	Full Name
1	A2G	5	Ligand/Ion	N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	CSD	1	Mod. Amino Acid	3-SULFINOALANINE
4	FUC	6	Ligand/Ion	ALPHA-L-FUCOSE
5	GAL	5	Ligand/Ion	BETA-D-GALACTOSE

Biological Unit 2 (4, 15)

No.	Name	Count	Type	Full Name
1	A2G	4	Ligand/Ion	N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	CSD	1	Mod. Amino Acid	3-SULFINOALANINE
4	FUC	6	Ligand/Ion	ALPHA-L-FUCOSE
5	GAL	4	Ligand/Ion	BETA-D-GALACTOSE

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:126 , GLU A:138 , MET A:140 , THR A:150 , ILE A:176 , TYR A:192 , TRP A:198 , HOH A:2285	BINDING SITE FOR RESIDUE FUC A 930
02	AC2	SOFTWARE	LYS A:50 , GLY A:255 , THR A:256	BINDING SITE FOR RESIDUE CL A1000
03	AC3	SOFTWARE	ARG B:73 , GLU B:85 , TYR B:95 , GLY B:97 , GLY B:98 , LEU B:125 , TRP B:141 , TRP B:146 , HOH B:2247	BINDING SITE FOR RESIDUE FUC B 920
04	AC4	SOFTWARE	ARG B:126 , GLU B:138 , THR B:150 , ILE B:176 , TYR B:192 , TRP B:198 , HOH B:2140 , HOH B:2259	BINDING SITE FOR RESIDUE FUC B 930
05	AC5	SOFTWARE	ARG A:25 , GLU A:37 , GLU A:41 , ASN A:46 , TYR A:88 , TRP A:94 , HIS A:252 , HOH A:2112 , HOH A:2227 , HOH A:2282 , HOH A:2284	BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC A 910 THROUGH A2G A 912
06	AC6	SOFTWARE	GLU A:41 , ASN A:46 , ARG A:73 , GLU A:85 , TYR A:88 , TYR A:95 , GLY A:97 , GLY A:98 , LEU A:125 , TRP A:141 , TRP A:146 , HIS A:252 , FUC A:910 , A2G A:942 , HOH A:2112 , HOH A:2149 , HOH A:2227 , HOH A:2284	BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC A 920 THROUGH A2G A 922
07	AC7	SOFTWARE	THR A:92 , GLY A:98 , TYR A:168 , ARG A:177 , GLN A:189 , TYR A:199 , ILE A:227 , TRP A:245 , FUC A:920 , HOH A:2149 , HOH A:2173 , HOH A:2174 , HOH A:2186 , HOH A:2210 , HOH A:2286 , HOH A:2287	BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC A 940 THROUGH A2G A 942
08	AC8	SOFTWARE	THR A:92 , TYR A:199 , ARG A:230 , GLN A:242 , CSD A:244 , TRP A:245 , LYS A:249 , HIS A:252 , ASP A:253 , PHE A:274 , LEU A:281 , TRP A:299 , A2G A:922 , FUC A:940 , HOH A:2173 , HOH A:2174 , HOH A:2186 , HOH A:2210 , HOH A:2225 , HOH A:2227 , HOH A:2289	BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC A 950 THROUGH A2G A 952
09	AC9	SOFTWARE	LEU A:24 , TYR A:40 , TRP A:44 , PRO A:200 , ASP A:201 , LYS A:249 , HIS A:252 , ASP A:253 , ARG A:282 , GLU A:296 , TRP A:299 , ASN A:300 , HIS A:303 , FUC A:950 , HOH A:2013 , HOH A:2225 , HOH A:2227 , HOH A:2276 , HOH A:2290 , HOH A:2291	BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC A 960 THROUGH A2G A 962
10	BC1	SOFTWARE	ARG A:25 , GLU A:37 , TYR A:40 , GLU A:41 , ASN A:46 , TYR A:88 , TRP A:94 , PRO A:200 , ASP A:201 , HIS A:252 , ASN A:300 , HIS A:303 , FUC A:960 , HOH A:2013 , HOH A:2112 , HOH A:2227 , HOH A:2282 , HOH A:2284 , HOH A:2290 , HOH A:2291 , ARG B:25 , GLU B:37 , TYR B:40 , GLY B:42 , ASN B:46 , TYR B:88 , TRP B:94 , HIS B:303 , FUC B:960 , HOH B:2256 , HOH B:2257 , HOH B:2258	BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC B 910 THROUGH A2G B 912
11	BC2	SOFTWARE	ASN B:46 , TYR B:88 , ARG B:177 , GLN B:189 , ASP B:201 , ILE B:227 , MET B:229 , TRP B:245 , FUC B:910 , HOH B:2156 , HOH B:2157 , HOH B:2167 , HOH B:2170 , HOH B:2193 , HOH B:2256 , HOH B:2257 , HOH B:2258 , HOH B:2260 , HOH B:2261	BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC B 940 THROUGH A2G B 942
12	BC3	SOFTWARE	LYS B:147 , ASP B:201 , ARG B:230 , GLN B:242 , CSD B:244 , HIS B:252 , ASP B:253 , TRP B:299 , FUC B:940 , HOH B:2156 , HOH B:2157 , HOH B:2167 , HOH B:2193 , HOH B:2197 , HOH B:2261 , HOH B:2262 , HOH B:2263	BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC B 950 THROUGH A2G B 952
13	BC4	SOFTWARE	LEU B:24 , TYR B:40 , GLY B:42 , TRP B:44 , LYS B:147 , HIS B:252 , ASP B:253 , ARG B:282 , GLU B:296 , TRP B:299 , HIS B:303 , FUC B:950 , HOH B:2197 , HOH B:2251 , HOH B:2263 , HOH B:2264	BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC B 960 THROUGH A2G B 962

(no "SS Bond" information available for 4AH4)

Asymmetric Unit

No.	Residues
1	Gly A:278	-	Pro A:279
2	Pro A:313	-	Pro A:314
3	Gly B:278	-	Pro B:279
4	Pro B:313	-	Pro B:314

(no "SAP(SNP)/Variant" information available for 4AH4)

(no "PROSITE Motif" information available for 4AH4)

(no "Exon" information available for 4AH4)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:314
 aligned with Q4WW81_ASPFU | Q4WW81 from UniProtKB/TrEMBL  Length:315

    Alignment length:314
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311    
         Q4WW81_ASPFU     2 STPGAQQVLFRTGIAAVNLTNHLRVYFQDVYGSIRESLYEGSWANGTEKNVIGNAKLGSPVAATSKELKHIRVYTLTEGNTLQEFAYDSGTGWYNGGLGGAKFQVAPYSRIAAVFLAGTDALQLRIYAQKPDNTIQEYMWNGDGWKEGTNLGGALPGTGIGATSFRYTDYNGPSIRIWFQTDDLKLVQRAYDPHKGWYPDLVTIFDRAPPRTAIAATSFGAGNSSIYMRIYFVNSDNTIWQVCWDHGKGYHDKGTITPVIQGSEVAIISWGSFANNGPDLRLYFQNGTYISAVSEWVWNRAHGSQLGRSALPPA 315
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhh......eeeeee..eeeeeee....eeeeeee...eee.hhh.eeee.......eeeee...eeeeeee.....eeeeeee...eeee.hhhhhh........eeeee........eeeeee....eeeeeee....eeeeeeeee......eeeeee........eeeeeee.....eeeeeee...ee....eeee........eeeeee.......eeeeeee....eeeeeeee...eeeeeeeeee......eeeeee.hhhhh..eeeeee.........eeeeee...eeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ah4 A   2 STPGAQQVLFRTGIAAVNSTNHLRVYFQDVYGSIRESLYEGSWANGTEKNVIGNAKLGSPVAATSKELKHIRVYTLTEGNTLQEFAYDSGTGWYNGGLGGAKFQVAPYSCIAAVFLAGTDALQLRIYAQKPDNTIQEYMWNGDGWKEGTNLGGALPGTGIGATSFRYTDYNGPSIRIWFQTDDLKLVQRAYDPHKGWYPDLVTIFDRAPPRTAIAATSFGAGNSSIYMRIYFVNSDNTIWQVcWDHGKGYHDKGTITPVIQGSEVAIISWGSFANNGPDLRLYFQNGTYISAVSEWVWNRAHGSQLGRSALPPA 315
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241  |    251       261       271       281       291       301       311    
                                                                                                                                                                                                                                                                            244-CSD

Chain B from PDB  Type:PROTEIN  Length:314
 aligned with Q4WW81_ASPFU | Q4WW81 from UniProtKB/TrEMBL  Length:315

    Alignment length:314
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311    
         Q4WW81_ASPFU     2 STPGAQQVLFRTGIAAVNLTNHLRVYFQDVYGSIRESLYEGSWANGTEKNVIGNAKLGSPVAATSKELKHIRVYTLTEGNTLQEFAYDSGTGWYNGGLGGAKFQVAPYSRIAAVFLAGTDALQLRIYAQKPDNTIQEYMWNGDGWKEGTNLGGALPGTGIGATSFRYTDYNGPSIRIWFQTDDLKLVQRAYDPHKGWYPDLVTIFDRAPPRTAIAATSFGAGNSSIYMRIYFVNSDNTIWQVCWDHGKGYHDKGTITPVIQGSEVAIISWGSFANNGPDLRLYFQNGTYISAVSEWVWNRAHGSQLGRSALPPA 315
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhh......eeeeee..eeeeeee....eeeeeee...eee.hhh.eeee.......eeeee...eeeeeee.....eeeeeee...eeee.hhhhhh........eeeee........eeeeee....eeeeeee....eeeeeeeee......eeeeee........eeeeeee.....eeeeeee...ee....eeee........eeeeee.......eeeeeee....eeeeeeee...eeeeeeeeee......eeeeee.hhhhh..eeeeeee.......eeeeeee...eeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ah4 B   2 STPGAQQVLFRTGIAAVNSTNHLRVYFQDVYGSIRESLYEGSWANGTEKNVIGNAKLGSPVAATSKELKHIRVYTLTEGNTLQEFAYDSGTGWYNGGLGGAKFQVAPYSCIAAVFLAGTDALQLRIYAQKPDNTIQEYMWNGDGWKEGTNLGGALPGTGIGATSFRYTDYNGPSIRIWFQTDDLKLVQRAYDPHKGWYPDLVTIFDRAPPRTAIAATSFGAGNSSIYMRIYFVNSDNTIWQVcWDHGKGYHDKGTITPVIQGSEVAIISWGSFANNGPDLRLYFQNGTYISAVSEWVWNRAHGSQLGRSALPPA 315
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241  |    251       261       271       281       291       301       311    
                                                                                                                                                                                                                                                                            244-CSD

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4AH4)

(no "CATH Domain" information available for 4AH4)

(no "Pfam Domain" information available for 4AH4)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q4WW81_ASPFU | Q4WW81)

molecular function
	GO:0030246	carbohydrate binding	Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
biological process
	GO:0008150	biological_process	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.

Asymmetric Unit
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	Cis Peptide Bonds
		Gly A:278 - Pro A:279	[ RasMol ]
		Gly B:278 - Pro B:279	[ RasMol ]
		Pro A:313 - Pro A:314	[ RasMol ]
		Pro B:313 - Pro B:314	[ RasMol ]

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	4ah4
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	Q4WW81_ASPFU \| Q4WW81	:	4agi 4agt 4aha 4c1y 4d4u 4d52 4uou

4agi	CRYSTAL STRUCTURE OF FUCOSE BINDING LECTIN FROM ASPERGILLUS FUMIGATUS (AFL) IN COMPLEX WITH SELENO FUCOSIDE.
4agt	CRYSTAL STRUCTURE OF FUCOSE BINDING LECTIN FROM ASPERGILLUS FUMIGATUS (AFL) IN COMPLEX WITH FUC1-6GLCNAC .
4ah5	CRYSTAL STRUCTURE OF FUCOSE BINDING LECTIN FROM ASPERGILLUS FUMIGATUS (AFL) IN COMPLEX WITH LEWISY TETRASACCHARIDE.
4aha	CRYSTAL STRUCTURE OF FUCOSE BINDING LECTIN FROM ASPERGILLUS FUMIGATUS (AFL) IN COMPLEX WITH FUCOSYLATED MONOSACCHARIDES (FUC1-2GAL, FUC1-3GLCNAC, FUC1-4GLCNAC AND FUC1-6GLCNAC)

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Ligands, Modified Residues, Ions (5, 33)

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Cis Peptide Bonds (4, 4)

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