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(-) Description

Title :  CRYSTAL STRUCTURE OF THE DB 985-D(CGCAAATTTGCG)2 COMPLEX AT 1.20 A RESOLUTION
 
Authors :  D. G. Munnur, E. P. Mitchell, V. T. Forsyth, S. C. M. Teixeira, S. Neidle
Date :  02 Feb 12  (Deposition) - 16 Jan 13  (Release) - 16 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Dna, Minor Groove, Dodecamer, A3T3, Dna-Drug Complex, Dna Hydration, Hydrated Magnesium (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. G. Munnur, E. P. Mitchell, V. T. Forsyth, S. C. M. Teixeira, S. Neidle
A Detailed Study Of Water Network In The Minor Groove Of D(Cgcgaattcgcg)2 And D(Cgcaaatttgcg)2 In Presence Of Linear Groove Binders
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*GP)-3'
    Chains: A, B
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1D981Ligand/Ion2-(4'-CARBAMIMIDOYL-2'-HYDROXYBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-CARBOXIMIDAMIDE
2MG3Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:2004 , HOH A:2028 , HOH A:2045 , HOH A:2063 , HOH A:2064 , HOH A:2073BINDING SITE FOR RESIDUE MG A3001
2AC2SOFTWAREDA A:6 , DT A:7 , DT A:8 , DT A:9 , HOH A:2062 , DA B:18 , DT B:19 , DT B:20 , DT B:21 , DG B:22 , HOH B:2055 , HOH B:2075 , HOH B:2076BINDING SITE FOR RESIDUE D98 B1025
3AC3SOFTWAREHOH B:2067 , HOH B:2077 , HOH B:2078 , HOH B:2079 , HOH B:2080 , HOH B:2081BINDING SITE FOR RESIDUE MG B3002
4AC4SOFTWAREHOH A:2098 , DG B:22 , HOH B:2017 , HOH B:2055 , HOH B:2061 , HOH B:2082 , HOH B:2083BINDING SITE FOR RESIDUE MG B3003

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4AH0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4AH0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4AH0)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4AH0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:12
                                           
                  4ah0 A  1 CGCAAATTTGCG 12
                                    10  


Chain B from PDB  Type:DNA  Length:12
                                           
                  4ah0 B 13 CGCAAATTTGCG 24
                                    22
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4AH0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4AH0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4AH0)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  4ah0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

4agz CRYSTAL STRUCTURE OF THE DB 985-D(CGCGAATTCGCG)2 COMPLEX AT 1.25 A RESOLUTION.
4ah1 CRYSTAL STRUCTURE OF THE DB 921-D(CGCAAATTTGCG)2 COMPLEX AT 1.42 A RESOLUTION