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(-) Description

Title :  STRUCTURE OF THE PERIPLASMIC DOMAIN OF THE HEPARIN AND HEPARAN SULPHATE SENSING HYBRID TWO COMPONENT SYSTEM BT4663 IN APO AND LIGAND BOUND FORMS
 
Authors :  E. C. Lowe, A. Basle, M. Czjzek, S. J. Firbank, D. N. Bolam
Date :  27 Sep 11  (Deposition) - 02 May 12  (Release) - 03 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Transcription, Beta-Propeller (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. C. Lowe, A. Basle, M. Czjzek, S. J. Firbank, D. N. Bolam
A Scissor Blade-Like Closing Mechanism Implicated In Transmembrane Signaling In A Bacteroides Hybrid Two- Component System.
Proc. Natl. Acad. Sci. Usa V. 109 7298 2012
PubMed-ID: 22532667  |  Reference-DOI: 10.1073/PNAS.1200479109

(-) Compounds

Molecule 1 - TWO-COMPONENT SYSTEM SENSOR HISTIDINE KINASE/RESPONSE
    Atcc: 29148
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PET28B
    Expression System Vector Type: PLASMID
    Fragment: PERIPLASMIC DOMAIN, RESIDUES 1-787
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON
    Organism Taxid: 226186
    Strain: VPI-5482
    Synonym: BT_4663

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1GCD4Ligand/Ion4,5-DEHYDRO-D-GLUCURONIC ACID
2NGS4Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-6-O-SULFO-BETA-D-GLUCOPYRANOSE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1GCD2Ligand/Ion4,5-DEHYDRO-D-GLUCURONIC ACID
2NGS2Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-6-O-SULFO-BETA-D-GLUCOPYRANOSE
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1GCD2Ligand/Ion4,5-DEHYDRO-D-GLUCURONIC ACID
2NGS2Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-6-O-SULFO-BETA-D-GLUCOPYRANOSE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:61 , GLN A:218 , GLU A:233 , ARG A:266 , PHE A:281 , SER A:311 , ARG A:313 , TYR A:328 , ASN B:375 , ASN B:407 , LYS B:409 , HIS B:425 , TYR B:455 , LEU B:470 , GLN B:499 , PHE B:544BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 1784 TO 1785
2AC2SOFTWAREASN A:375 , HIS A:425 , TYR A:455 , PHE A:544 , TYR B:61 , GLN B:218 , ARG B:266 , PHE B:281 , SER B:311 , ARG B:313 , TYR B:328BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 1784 TO 1785
3AC3SOFTWARETYR C:61 , ARG C:266 , PHE C:281 , SER C:311 , ARG C:313 , TYR C:328 , ASN D:375 , HIS D:425 , TYR D:455 , GLN D:499 , THR D:501 , PHE D:544BINDING SITE FOR CHAIN C OF POLYSACCHARIDE RESIDUES 1784 TO 1785
4AC4SOFTWAREASN C:375 , LYS C:409 , HIS C:425 , TYR C:455 , LEU C:470 , GLN C:499 , PHE C:544 , TYR D:61 , GLN D:216 , GLN D:218 , GLU D:233 , ARG D:266 , PHE D:281 , SER D:311 , ARG D:313 , TYR D:328 , PHE D:329BINDING SITE FOR DI-SACCHARIDE GCD D1784 AND NGS D1785

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4A2M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4A2M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4A2M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4A2M)

(-) Exons   (0, 0)

(no "Exon" information available for 4A2M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:741
 aligned with Q89YR8_BACTN | Q89YR8 from UniProtKB/TrEMBL  Length:1353

    Alignment length:756
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777      
         Q89YR8_BACTN    28 QITFSYISINEGLSQSTVFSIDQDKRGNMWFATYDGVNKYDGYAFTVYQHNEDDPNSIANDISRIVKTDSQGRVWIGTRDGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTPEGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTREGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTNRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGINGITTFRPELLLDNPYTPPVVITKLQLFNKVVRPDDETGILTKNISETKSITLKSWQTAFSIEFVVSNYISGQHNTFAYKLEGYDKEWYYLTDSRTVSYSNLPQGTYQFLVKAANSDGKWNPIPTALEIIVLPI 783
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeehhhhh.....eeeeee.....eeeee...eeee....eeee..............eeeeee.....eeeee..eeeeee....eeeee..ee..ee....eeeeee..eeeeee..eeeeee....eee....hhhhhh..eeeeeee..eeeeee....eeeee.....eee..----...eeeeeeee..eeeeee....eeeee....eeeee..............eeeeee.....eeeee...eeee......eeee..............eeeeee.....eeeee....eeee.......eee.............eeeeee.....eeeee....eeee......eeee...-----------.eeeeeee....eeeeee...eeeeee.....eeee...........eeeeee.....eeeee...eeeee....eeee..............eeeeee.....eeeee...eeeeeee..eeee......hhhhhh.eeeeee.....eeeee..eeeeee....eeeeehhhhh.......eeee.....eeeee..eeeeee....eeeeehhhhh.....eeeeeeee.....eeeee...eeee.............eeeeeeee..ee..................eeee......eeeeeee.........eeeeeee......eee....eeee.....eeeeeeeeee..........eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4a2m A  28 QITFSYISINEGLSQSTVFSIDQDKRGNMWFATYDGVNKYDGYAFTVYQHNEDDPNSIANDISRIVKTDSQGRVWIGTRDGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTPEGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVI----TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQ-----------NIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTREGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTNRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGINGITTFRPELLLDNPYTPPVVITKLQLFNKVVRPDDETGILTKNISETKSITLKSWQTAFSIEFVVSNYISGQHNTFAYKLEGYDKEWYYLTDSRTVSYSNLPQGTYQFLVKAANSDGKWNPIPTALEIIVLPI 783
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207 |    |217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       | -       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777      
                                                                                                                                                                                                               209  214                                                                                                                                                                                  395         407                                                                                                                                                                                                                                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:750
 aligned with Q89YR8_BACTN | Q89YR8 from UniProtKB/TrEMBL  Length:1353

    Alignment length:756
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777      
         Q89YR8_BACTN    28 QITFSYISINEGLSQSTVFSIDQDKRGNMWFATYDGVNKYDGYAFTVYQHNEDDPNSIANDISRIVKTDSQGRVWIGTRDGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTPEGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTREGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTNRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGINGITTFRPELLLDNPYTPPVVITKLQLFNKVVRPDDETGILTKNISETKSITLKSWQTAFSIEFVVSNYISGQHNTFAYKLEGYDKEWYYLTDSRTVSYSNLPQGTYQFLVKAANSDGKWNPIPTALEIIVLPI 783
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeehhhhh.....eeeeee.....eeeee...eeee....eeee..............eeeeee.....eeeee...eeeee....eeeee..ee..ee....eeeeee..eeeee....eeeee....eee....hhhhhh..eeeeeee..eeeeee....eeeee.....eee..----...eeeeeeee..eeeeee....eeee......eeee..............eeeeee.....eeeee...eeee......eeee..............eeeeee.....eeeee....eeee.......eee.............eeeeee.....eeeee....eeee......eeee.....--........eeeeeee....eeeeee...eeeeee.....eeee...........eeeeee.....eeeee...eeeee....eeeee...............eeee.....eeee....eeeeeee..eeee......hhhhhh.eeeeee.....eeeee..eeeeee....eeeeehhhhh.......eeee.....eeee....eeeee....eeeeehhhhh.....eeeeeeee.....eeeee...eeee.............eeeeeeee..ee..................eeee......eeeeeee.........eeeeeee......eee....eeee.....eeeeeeeeee..........eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4a2m B  28 QITFSYISINEGLSQSTVFSIDQDKRGNMWFATYDGVNKYDGYAFTVYQHNEDDPNSIANDISRIVKTDSQGRVWIGTRDGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTPEGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVI----TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQED--ARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTREGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTNRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGINGITTFRPELLLDNPYTPPVVITKLQLFNKVVRPDDETGILTKNISETKSITLKSWQTAFSIEFVVSNYISGQHNTFAYKLEGYDKEWYYLTDSRTVSYSNLPQGTYQFLVKAANSDGKWNPIPTALEIIVLPI 783
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207 |    |217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397  |    407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777      
                                                                                                                                                                                                               209  214                                                                                                                                                                                    397  |                                                                                                                                                                                                                                                                                                                                                                                               
                                                                                                                                                                                                                                                                                                                                                                                                              400                                                                                                                                                                                                                                                                                                                                                                                               


Chain C from PDB  Type:PROTEIN  Length:743
 aligned with Q89YR8_BACTN | Q89YR8 from UniProtKB/TrEMBL  Length:1353

    Alignment length:756
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777      
         Q89YR8_BACTN    28 QITFSYISINEGLSQSTVFSIDQDKRGNMWFATYDGVNKYDGYAFTVYQHNEDDPNSIANDISRIVKTDSQGRVWIGTRDGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTPEGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTREGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTNRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGINGITTFRPELLLDNPYTPPVVITKLQLFNKVVRPDDETGILTKNISETKSITLKSWQTAFSIEFVVSNYISGQHNTFAYKLEGYDKEWYYLTDSRTVSYSNLPQGTYQFLVKAANSDGKWNPIPTALEIIVLPI 783
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeehhhhh.....eeeeee.....eeeee...eeee....eeee..............eeeeee.....eeeee...eeeee....eeeee..ee..ee....eeee....eeeeee..eeeeee....eee....hhhhhh..eeeeeee..eeeeee....eeeee.....eee.-------.eeeeeeee..eeeeee....eeeee....eeeee..............eeeeee.....eeeee...eeee......eeee..............eeeeee.....eeeee....eeee.......eee.............eeeeee.....eeeee....eeee......eeee...------......eeeeeee....eeeeee...eeeeee.....eeee...........eeeeee.....eeeee...eeeee....eeeee...............eeee.....eeee....eeeeeee..eeee......hhhhhh.eeeeee.....eeeee..eeeeee....eeeee............eeee.....eeeee..eeeeee....eeeeehhhhh.....eeeeeeee.....eeeee...eeee.............eeeeeeee..ee..................eeee......eeeeeee.........eeeeeee......eee....eeee.....eeeeeeeeee..........eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4a2m C  28 QITFSYISINEGLSQSTVFSIDQDKRGNMWFATYDGVNKYDGYAFTVYQHNEDDPNSIANDISRIVKTDSQGRVWIGTRDGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTPEGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKV-------QIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQ------GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTREGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTNRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGINGITTFRPELLLDNPYTPPVVITKLQLFNKVVRPDDETGILTKNISETKSITLKSWQTAFSIEFVVSNYISGQHNTFAYKLEGYDKEWYYLTDSRTVSYSNLPQGTYQFLVKAANSDGKWNPIPTALEIIVLPI 783
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207|      217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       | -    |  407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777      
                                                                                                                                                                                                              208     216                                                                                                                                                                                395    402                                                                                                                                                                                                                                                                                                                                                                                             


Chain D from PDB  Type:PROTEIN  Length:745
 aligned with Q89YR8_BACTN | Q89YR8 from UniProtKB/TrEMBL  Length:1353

    Alignment length:756
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777      
         Q89YR8_BACTN    28 QITFSYISINEGLSQSTVFSIDQDKRGNMWFATYDGVNKYDGYAFTVYQHNEDDPNSIANDISRIVKTDSQGRVWIGTRDGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTPEGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTREGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTNRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGINGITTFRPELLLDNPYTPPVVITKLQLFNKVVRPDDETGILTKNISETKSITLKSWQTAFSIEFVVSNYISGQHNTFAYKLEGYDKEWYYLTDSRTVSYSNLPQGTYQFLVKAANSDGKWNPIPTALEIIVLPI 783
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeehhhhh.....eeeeee.....eeeee...eeee....eeee..............eeeeee.....eeeee...eeeee....eeeee..ee..ee....eeeeee..eeeee....eeeee....eee....hhhhhh..eeeeeee..eeeeee....eeeee.....eee.-----...eeeeeeee..eeeeee....eeeee....eeeee..............eeeeee.....eeeee...eeee......eeee..............eeeeee.....eeeee....eeee.......eee.............eeeeee.....eeeee....eeee......eeee...------......eeeeeee....eeeeee...eeeeee.....eeee...........eeeeee.....eeeee...eeeee....eeee................eeee.....eeee....eeeeeee..eeee......hhhhhh.eeeeee.....eeeee..eeeeee....eeeeehhhhh.......eeee.....eeeee..eeeeee....eeeeehhhhh.....eeeeeeee.....eeeee...eeee.............eeeeeeee..ee..................eeee......eeeeeee.........eeeeeee......eee....eeee.....eeeeeeeeee..........eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4a2m D  28 QITFSYISINEGLSQSTVFSIDQDKRGNMWFATYDGVNKYDGYAFTVYQHNEDDPNSIANDISRIVKTDSQGRVWIGTRDGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTPEGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKV-----TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQ------GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTREGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTNRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGINGITTFRPELLLDNPYTPPVVITKLQLFNKVVRPDDETGILTKNISETKSITLKSWQTAFSIEFVVSNYISGQHNTFAYKLEGYDKEWYYLTDSRTVSYSNLPQGTYQFLVKAANSDGKWNPIPTALEIIVLPI 783
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207|     |217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       | -    |  407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777      
                                                                                                                                                                                                              208   214                                                                                                                                                                                  395    402
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4A2M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4A2M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4A2M)

(-) Gene Ontology  (15, 15)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q89YR8_BACTN | Q89YR8)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000155    phosphorelay sensor kinase activity    Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response.
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0016772    transferase activity, transferring phosphorus-containing groups    Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
biological process
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0023014    signal transduction by protein phosphorylation    A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  Q89YR8_BACTN | Q89YR8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q89YR8_BACTN | Q89YR8: 4a2l

(-) Related Entries Specified in the PDB File

4a2l STRUCTURE OF THE PERIPLASMIC DOMAIN OF THE HEPARIN AND HEPARAN SULPHATE SENSING HYBRID TWO COMPONENT SYSTEM BT4663 IN APO AND LIGAND BOUND FORMS