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(-) Description

Title :  NI2+/GUANINE INTERACTIONS AND NETROPSIN/GUANINE STACKING IN D(CGTATATACG)2
 
Authors :  N. G. A. Abrescia, L. Malinina, J. A. Subirana
Date :  18 May 99  (Deposition) - 02 Dec 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.58
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Netropsin/Guanine Stacking, Ni2+/Guanine Interactions, Minor Groove Binding, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. G. Abrescia, L. Malinina, J. A. Subirana
Stacking Interaction Of Guanine With Netropsin In The Minor Groove Of D(Cgtatatacg)2.
J. Mol. Biol. V. 294 657 1999
PubMed-ID: 10610787  |  Reference-DOI: 10.1006/JMBI.1999.3280
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*TP*AP*TP*AP*TP*AP*CP*G)-3')
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1NI4Ligand/IonNICKEL (II) ION
2NT1Ligand/IonNETROPSIN

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDT A:3 , DA A:4 , DA A:6 , DT A:7 , DG A:10 , HOH A:1001 , DA B:14 , DT B:15 , DA B:16 , DT B:17 , DA B:18 , DC B:19 , HOH B:1039 , HOH B:1048 , HOH B:1049 , HOH B:1059BINDING SITE FOR RESIDUE NT B 21
2AC2SOFTWAREDG A:10 , HOH A:1000 , HOH A:1001 , HOH A:1002 , HOH A:1003 , HOH A:1004BINDING SITE FOR RESIDUE NI A 350
3AC3SOFTWAREDG B:12 , HOH B:1005 , HOH B:1006 , HOH B:1007 , HOH B:1008 , HOH B:1009BINDING SITE FOR RESIDUE NI B 351
4AC4SOFTWAREDG A:2 , HOH A:1010 , HOH A:1011 , HOH A:1012 , HOH A:1013 , HOH A:1014BINDING SITE FOR RESIDUE NI A 352
5AC5SOFTWAREDT A:5 , DG B:20 , HOH B:1015 , HOH B:1016 , HOH B:1017 , HOH B:1018BINDING SITE FOR RESIDUE NI B 353

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 473D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 473D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:10
                                         
                  473d A  1 CGTATATACG 10
                                    10


Chain B from PDB  Type:DNA  Length:10
                                         
                  473d B 11 CGTATATACG 20
                                    20
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 473D)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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  473d
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