3ZYJ - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   NETRING1 IN COMPLEX WITH NGL1

Authors :   E. Seiradake, C. H. Coles, P. V. Perestenko, K. Harlos, R. A. J. Mcilhinn A. R. Aricescu, E. Y. Jones

Date :   23 Aug 11 (Deposition) - 05 Oct 11 (Release) - 16 Nov 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.25

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Cell Adhesion, Synapse (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Seiradake, C. H. Coles, P. V. Perestenko, K. Harlos, R. A. J. Mcilhinney, A. R. Aricescu, E. Y. Jones
Structural Basis For Cell Surface Patterning Through Netring-Ngl Interactions.
Embo J. V. 30 4479 2011
PubMed-ID: 21946559 | Reference-DOI: 10.1038/EMBOJ.2011.346

Molecule 1 - LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4C
	Chains	:	A, C
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Cell Line	:	HEK 293 GNTI(-)
	Expression System Common	:	HUMAN
	Expression System Plasmid	:	PHLSEC
	Expression System Taxid	:	9606
	Expression System Vector Type	:	PLASMID
	Fragment	:	LRR AND IG DOMAINS, 44-444
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	NGL1, NETRIN-G1 LIGAND, NGL-1

Molecule 2 - NETRIN-G1
	Chains	:	B, D
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Cell Line	:	HEK 293 GNTI(-)
	Expression System Common	:	HUMAN
	Expression System Plasmid	:	PHLSEC
	Expression System Taxid	:	9606
	Expression System Vector Type	:	PLASMID
	Fragment	:	LAM AND EGF1 DOMAINS, 365-783
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	NETRING1, LAMINET-1

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 12)

No.	Name	Count	Type	Full Name
1	BMA	1	Ligand/Ion	BETA-D-MANNOSE
2	CA	2	Ligand/Ion	CALCIUM ION
3	MAN	1	Ligand/Ion	ALPHA-D-MANNOSE
4	NAG	8	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	BMA	-1	Ligand/Ion	BETA-D-MANNOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	MAN	-1	Ligand/Ion	ALPHA-D-MANNOSE
4	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 2 (3, 6)

No.	Name	Count	Type	Full Name
1	BMA	1	Ligand/Ion	BETA-D-MANNOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	MAN	1	Ligand/Ion	ALPHA-D-MANNOSE
4	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLN A:256 , ASN A:278	BINDING SITE FOR RESIDUE NAG A1445
02	AC2	SOFTWARE	ASP B:66 , GLN B:141 , ASN B:143 , ARG B:273 , ARG B:275 , NAG B:1372	BINDING SITE FOR RESIDUE NAG B1370
03	AC3	SOFTWARE	TRP B:45 , TYR B:47 , ASN B:330 , TYR B:343	BINDING SITE FOR RESIDUE NAG B1371
04	AC4	SOFTWARE	NAG B:1370	BINDING SITE FOR RESIDUE NAG B1372
05	AC5	SOFTWARE	LEU B:105 , ASP B:108 , GLU B:110 , THR B:126 , SER B:299	BINDING SITE FOR RESIDUE CA B1373
06	AC6	SOFTWARE	GLN C:256 , ASN C:278	BINDING SITE FOR RESIDUE NAG C1445
07	AC7	SOFTWARE	TRP D:45 , TYR D:47 , ASN D:330 , TYR D:343	BINDING SITE FOR RESIDUE NAG D1370
08	AC8	SOFTWARE	ASP D:66 , ASN D:143 , ARG D:273 , ARG D:275 , NAG D:1372	BINDING SITE FOR RESIDUE NAG D1371
09	AC9	SOFTWARE	NAG D:1371 , BMA D:1373 , MAN D:1374	BINDING SITE FOR RESIDUE NAG D1372
10	BC1	SOFTWARE	SER D:149 , TYR D:178 , NAG D:1372 , MAN D:1374	BINDING SITE FOR RESIDUE BMA D1373
11	BC2	SOFTWARE	NAG D:1372 , BMA D:1373	BINDING SITE FOR RESIDUE MAN D1374
12	BC3	SOFTWARE	LEU D:105 , ASP D:108 , GLU D:110 , THR D:126 , SER D:299 , ASP D:300	BINDING SITE FOR RESIDUE CA D1375

(no "SS Bond" information available for 3ZYJ)

Asymmetric Unit

No.	Residues
1	Thr A:332	-	Pro A:333
2	Asp B:66	-	Pro B:67
3	Asp B:74	-	Pro B:75
4	Tyr B:136	-	Pro B:137
5	Leu B:354	-	Pro B:355
6	Ile B:356	-	Pro B:357
7	Thr C:332	-	Pro C:333
8	Asp D:66	-	Pro D:67
9	Asp D:74	-	Pro D:75
10	Tyr D:136	-	Pro D:137
11	Leu D:354	-	Pro D:355
12	Ile D:356	-	Pro D:357

(no "SAP(SNP)/Variant" information available for 3ZYJ)

Asymmetric Unit (4, 20)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LAMININ_NTER	PS51117	Laminin N-terminal domain profile.	NTNG1_HUMAN	46-296	2	B:46-306 D:46-306
2	LRR	PS51450	Leucine-rich repeat profile.	LRC4C_HUMAN	77-98 101-122 125-146 149-170 198-219 220-241 268-289	14	A:77-98 C:77-98 A:101-122 C:101-122 A:125-146 C:125-146 A:149-170 C:149-170 A:198-219 C:198-219 A:220-241 C:220-241 A:268-289 C:268-289
3	EGF_LAM_2	PS50027	Laminin-type EGF-like (LE) domain profile.	NTNG1_HUMAN	297-356 364-419 420-469	2	B:307-366 D:307-366 - -
4	EGF_1	PS00022	EGF-like domain signature 1.	NTNG1_HUMAN	315-326 438-449 486-497	2	B:325-336 D:325-336 - -

Biological Unit 1 (4, 10)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LAMININ_NTER	PS51117	Laminin N-terminal domain profile.	NTNG1_HUMAN	46-296	1	B:46-306 -
2	LRR	PS51450	Leucine-rich repeat profile.	LRC4C_HUMAN	77-98 101-122 125-146 149-170 198-219 220-241 268-289	7	A:77-98 - A:101-122 - A:125-146 - A:149-170 - A:198-219 - A:220-241 - A:268-289 -
3	EGF_LAM_2	PS50027	Laminin-type EGF-like (LE) domain profile.	NTNG1_HUMAN	297-356 364-419 420-469	1	B:307-366 - - -
4	EGF_1	PS00022	EGF-like domain signature 1.	NTNG1_HUMAN	315-326 438-449 486-497	1	B:325-336 - - -

Biological Unit 2 (4, 10)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LAMININ_NTER	PS51117	Laminin N-terminal domain profile.	NTNG1_HUMAN	46-296	1	- D:46-306
2	LRR	PS51450	Leucine-rich repeat profile.	LRC4C_HUMAN	77-98 101-122 125-146 149-170 198-219 220-241 268-289	7	- C:77-98 - C:101-122 - C:125-146 - C:149-170 - C:198-219 - C:220-241 - C:268-289
3	EGF_LAM_2	PS50027	Laminin-type EGF-like (LE) domain profile.	NTNG1_HUMAN	297-356 364-419 420-469	1	- D:307-366 - -
4	EGF_1	PS00022	EGF-like domain signature 1.	NTNG1_HUMAN	315-326 438-449 486-497	1	- D:325-336 - -

(no "Exon" information available for 3ZYJ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:396
 aligned with LRC4C_HUMAN | Q9HCJ2 from UniProtKB/Swiss-Prot  Length:640

    Alignment length:400
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444
          LRC4C_HUMAN    45 QTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 444
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee.....eee..................eee.......ee............eee.......ee.hhhhh......eee.....................eee.......ee............eee........ee............eee...................eee.......ee............eee.......ee............eee.....................eee.....ee....hhhhhhhhhh...........eee..........----.........eee....eeee.....ee..ee.....eeeee.....eee.......eee.....eee........eeeeeeee....eeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------LRR  PDB: A:77-98     --LRR  PDB: A:101-122   --LRR  PDB: A:125-146   --LRR  PDB: A:149-170   ---------------------------LRR  PDB: A:198-219   LRR  PDB: A:220-241   --------------------------LRR  PDB: A:268-289   ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zyj A  45 QTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIG----NYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 444
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       | -  |    354       364       374       384       394       404       414       424       434       444
                                                                                                                                                                                                                                                                                                                                   342  347

Chain B from PDB  Type:PROTEIN  Length:326
 aligned with NTNG1_HUMAN | Q9Y2I2 from UniProtKB/Swiss-Prot  Length:539

    Alignment length:330
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359
          NTNG1_HUMAN    30 YDLCKTQIYTEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSIS 359
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eee........eee.......ee.hhh.eeeeehhhh......ee............ee.........hhhhhhh..----...ee............eeeeeeeeeeeee...eeeee......eeeeeee.......eeeeeee.hhhhhh.....hhhhh.........ee............eeee.hhhhhhhhhh....hhhhhhhhhhhhhhhhhhheeeeeeeeeee...........hhhhh..eeeeee.eeee........eeee..eeee.....ee.....ee.............................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ----------------LAMININ_NTER  PDB: B:46-306 UniProt: 46-296                                                                                                                                                                                                                EGF_LAM_2  PDB: B:307-366 UniProt: 297-356                  --- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGF_1       --------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zyj B  30 YDLCKTQIYTEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFE----STFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSIS 369
                                    39        49        59        69        79        89        99       109|    | 129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369
                                                                                                          110  125

Chain C from PDB  Type:PROTEIN  Length:396
 aligned with LRC4C_HUMAN | Q9HCJ2 from UniProtKB/Swiss-Prot  Length:640

    Alignment length:400
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444
          LRC4C_HUMAN    45 QTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 444
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee.....eee..................eee.......ee............eee.......ee.hhhhh......eee.....................eee.......ee............eee........ee............eee...................eee.......ee............eee.......ee............eee.....................eee.....ee....hhhhhhhhhh...........eee..........----.........eee....eee......ee..ee.....eeeee.....ee........eee.....eee...hhhhheeeeeeee....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------LRR  PDB: C:77-98     --LRR  PDB: C:101-122   --LRR  PDB: C:125-146   --LRR  PDB: C:149-170   ---------------------------LRR  PDB: C:198-219   LRR  PDB: C:220-241   --------------------------LRR  PDB: C:268-289   ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zyj C  45 QTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIG----NYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 444
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       | -  |    354       364       374       384       394       404       414       424       434       444
                                                                                                                                                                                                                                                                                                                                   342  347

Chain D from PDB  Type:PROTEIN  Length:326
 aligned with NTNG1_HUMAN | Q9Y2I2 from UniProtKB/Swiss-Prot  Length:539

    Alignment length:330
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359
          NTNG1_HUMAN    30 YDLCKTQIYTEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSIS 359
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee....eeeee.........hhhhheeeeehhhh......ee............ee.........hhhhhh...----...ee............eeeeee....eee...eeeee......eeeeeee.......eeeeeee.hhhhhh.....hhhhh.........ee............eeee.hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhee.eeeeeeee...........hhhhh..eeeeee..eee........eeee..eeee.....ee.....ee.............................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ----------------LAMININ_NTER  PDB: D:46-306 UniProt: 46-296                                                                                                                                                                                                                EGF_LAM_2  PDB: D:307-366 UniProt: 297-356                  --- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGF_1       --------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zyj D  30 YDLCKTQIYTEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFE----STFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSIS 369
                                    39        49        59        69        79        89        99       109|    | 129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369
                                                                                                          110  125

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3ZYJ)

(no "CATH Domain" information available for 3ZYJ)

(no "Pfam Domain" information available for 3ZYJ)

Asymmetric Unit(hide GO term definitions)

Chain A,C (LRC4C_HUMAN | Q9HCJ2)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004860	protein kinase inhibitor activity	Stops, prevents or reduces the activity of a protein kinase, an enzyme which phosphorylates a protein.
biological process
	GO:0019221	cytokine-mediated signaling pathway	A series of molecular signals initiated by the binding of a cytokine to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
	GO:0046426	negative regulation of JAK-STAT cascade	Any process that stops, prevents, or reduces the frequency, rate or extent of the JAK-STAT signaling pathway activity.
	GO:0006469	negative regulation of protein kinase activity	Any process that stops, prevents, or reduces the frequency, rate or extent of protein kinase activity.
	GO:0050770	regulation of axonogenesis	Any process that modulates the frequency, rate or extent of axonogenesis, the generation of an axon, the long process of a neuron.
cellular component
	GO:0030054	cell junction	A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
	GO:0045211	postsynaptic membrane	A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters cross the synaptic cleft and transmit the signal to the postsynaptic membrane.
	GO:0045202	synapse	The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.

Chain B,D (NTNG1_HUMAN | Q9Y2I2)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0007409	axonogenesis	De novo generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells. Refers to the morphogenesis or creation of shape or form of the developing axon.
	GO:0030154	cell differentiation	The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
	GO:0007275	multicellular organism development	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
	GO:0007399	nervous system development	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.
cellular component
	GO:0031225	anchored component of membrane	The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
	GO:0046658	anchored component of plasma membrane	The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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	3zyj
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(no "Entries Sharing at Least One Protein Chain" available for 3ZYJ)

3zyi	NETRING2 IN COMPLEX WITH NGL2

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 12)

Sites (12, 12)

SS Bonds (0, 0)

Cis Peptide Bonds (12, 12)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (4, 20)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (0, 0)

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Pfam Domains (0, 0)

Gene Ontology (20, 23)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File