3ZWC - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF RAT PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 1 (RPMFE1) COMPLEXED WITH 3S-HYDROXY-DECANOYL-COA

Authors :   P. Kasaragod, W. Schmitz, J. K. Hiltunen, R. K. Wierenga

Date :   28 Jul 11 (Deposition) - 08 Aug 12 (Release) - 03 Jul 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Beta Oxidation Pathway, Oxidoreductase, Lipid Metabolism, Lyase, Isomerase, Peroxisome, Fatty Acid Metabolism (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Kasaragod, W. Schmitz, J. Kalervo Hiltunen, R. K. Wierenga
The Isomerase And Hydratase Reaction Mechanism Of The Crotonase Active Site Of The Multifunctional Enzyme (Type- 1), As Deduced From Structures Of Complexes With 3S-Hydroxy- Acyl-Coa.
Febs J. V. 280 3160 2013
PubMed-ID: 23351063 | Reference-DOI: 10.1111/FEBS.12150
(for further references see the PDB file header)

Molecule 1 - PEROXISOMAL BIFUNCTIONAL ENZYME
	Chains	:	A, B
	EC Number	:	4.2.1.17, 5.3.3.8, 1.1.1.35
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector	:	PET15B
	Expression System Vector Type	:	PLASMID
	Organ	:	PEROXISOME
	Organism Common	:	NORWAY RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116
	Synonym	:	PBE, PBFE, MULTIFUNCTIONAL ENZYME TYPE-1,ENOYL-COA HYDRATASE/3,2-TRANS-ENOYL-COA ISOMERASE, 3-HYDROXYACYL-COA DEHYDROGENASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 8)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	HSC	2	Ligand/Ion	(S)-3-HYDROXYDECANOYL-COA
3	NAD	2	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 4)

No.	Name	Count	Type	Full Name
1	GOL	-1	Ligand/Ion	GLYCEROL
2	HSC	1	Ligand/Ion	(S)-3-HYDROXYDECANOYL-COA
3	NAD	1	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (4, 4)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	HSC	1	Ligand/Ion	(S)-3-HYDROXYDECANOYL-COA
3	NAD	1	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER B:521 , ARG B:533 , HOH B:2118	BINDING SITE FOR RESIDUE GOL B1719
2	AC2	SOFTWARE	LEU A:302 , GLY A:303 , GLY A:305 , THR A:306 , MET A:307 , GLU A:326 , SER A:327 , GLN A:331 , ALA A:380 , VAL A:381 , PHE A:382 , GLU A:383 , LYS A:388 , ASN A:408 , SER A:410 , PHE A:432 , SER A:434 , HOH A:2098	BINDING SITE FOR RESIDUE NAD A1721
3	AC3	SOFTWARE	THR A:597 , LEU B:302 , GLY B:305 , THR B:306 , MET B:307 , GLU B:326 , SER B:327 , GLN B:331 , ALA B:380 , VAL B:381 , PHE B:382 , GLU B:383 , LYS B:388 , VAL B:391 , ASN B:408 , SER B:410 , HIS B:431 , HOH B:2085 , HOH B:2097	BINDING SITE FOR RESIDUE NAD B1720
4	AC4	SOFTWARE	PRO A:191 , ILE A:192 , GLU A:193 , ARG A:196	BINDING SITE FOR RESIDUE SO4 A1722
5	AC5	SOFTWARE	SER A:261 , GLY A:262 , HOH A:2073 , HOH A:2231	BINDING SITE FOR RESIDUE SO4 A1723
6	AC6	SOFTWARE	PRO B:191 , ILE B:192 , GLU B:193 , ARG B:196	BINDING SITE FOR RESIDUE SO4 B1721
7	AC7	SOFTWARE	PRO A:20 , VAL A:21 , ALA A:23 , ALA A:59 , GLY A:60 , ALA A:61 , ASP A:62 , ILE A:63 , PHE A:66 , GLY A:72 , LEU A:73 , ALA A:74 , LEU A:75 , VAL A:96 , GLY A:99 , GLY A:100 , GLU A:103 , ARG A:118 , GLU A:123 , GLY A:131 , TYR A:156 , LYS A:275 , HOH A:2024 , HOH A:2080	BINDING SITE FOR RESIDUE HSC A1724
8	AC8	SOFTWARE	PRO B:20 , ALA B:59 , GLY B:60 , ALA B:61 , ASP B:62 , ILE B:63 , PHE B:66 , GLY B:72 , LEU B:73 , VAL B:96 , LEU B:98 , GLY B:100 , GLU B:103 , PRO B:122 , GLU B:123 , LEU B:126 , PRO B:130 , GLY B:131 , TYR B:156 , PHE B:255 , PHE B:271 , LYS B:275 , HOH B:2004 , HOH B:2007 , HOH B:2015	BINDING SITE FOR RESIDUE HSC B1722

(no "SS Bond" information available for 3ZWC)

Asymmetric Unit

No.	Residues
1	Pro A:19	-	Pro A:20
2	Ser A:434	-	Pro A:435
3	Pro B:19	-	Pro B:20
4	Ser B:434	-	Pro B:435

(no "SAP(SNP)/Variant" information available for 3ZWC)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ENOYL_COA_HYDRATASE	PS00166	Enoyl-CoA hydratase/isomerase signature.	ECHP_RAT	90-110	2	A:90-110 B:90-110
2	3HCDH	PS00067	3-hydroxyacyl-CoA dehydrogenase signature.	ECHP_RAT	474-498	2	A:474-498 B:474-498

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ENOYL_COA_HYDRATASE	PS00166	Enoyl-CoA hydratase/isomerase signature.	ECHP_RAT	90-110	1	A:90-110 -
2	3HCDH	PS00067	3-hydroxyacyl-CoA dehydrogenase signature.	ECHP_RAT	474-498	1	A:474-498 -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ENOYL_COA_HYDRATASE	PS00166	Enoyl-CoA hydratase/isomerase signature.	ECHP_RAT	90-110	1	- B:90-110
2	3HCDH	PS00067	3-hydroxyacyl-CoA dehydrogenase signature.	ECHP_RAT	474-498	1	- B:474-498

Asymmetric Unit (7, 14)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSRNOT00000002410	1	ENSRNOE00000016807	chr11:81474172-81474255	84	ECHP_RAT	1-25	25	2	A:1-25 B:1-25	25 25
1.2	ENSRNOT00000002410	2	ENSRNOE00000230475	chr11:81484849-81484952	104	ECHP_RAT	25-60	36	2	A:25-60 B:25-60	36 36
1.3	ENSRNOT00000002410	3	ENSRNOE00000230472	chr11:81488787-81488956	170	ECHP_RAT	60-116	57	2	A:60-116 B:60-116	57 57
1.4	ENSRNOT00000002410	4	ENSRNOE00000230466	chr11:81490895-81491006	112	ECHP_RAT	117-154	38	2	A:117-154 B:117-154	38 38
1.5	ENSRNOT00000002410	5	ENSRNOE00000016816	chr11:81494173-81494277	105	ECHP_RAT	154-189	36	2	A:154-189 B:154-189	36 36
1.6	ENSRNOT00000002410	6	ENSRNOE00000016818	chr11:81502243-81502584	342	ECHP_RAT	189-303	115	2	A:189-303 B:189-303	115 115
1.7	ENSRNOT00000002410	7	ENSRNOE00000016820	chr11:81505473-81507660	2188	ECHP_RAT	303-722	420	2	A:303-720 B:303-718	418 416

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:725
 aligned with ECHP_RAT | P07896 from UniProtKB/Swiss-Prot  Length:722

    Alignment length:725
                                 1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
                                 |   5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715     
             ECHP_RAT     - -----MAEYLRLPHSLAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIKFAQKIIDKPIEPRRIFNKPVPSLPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPLKEWQSLAGPHGS 720
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....eeeeee........hhhhhhhhhhhhhhhhh.....eeeeee....................hhhhhhhhhhhhh...eeeee..eeehhhhhhhhh..eeeee...eeehhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh..eehhhhhhh....eee..hhhhhhhhhhhhhh...hhhhhhhhh......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................eeeee..hhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhhhhhhhh.........eeee.hhhhhhh..eeee....hhhhhhhhhhhhhhhh....eeee.....hhhhhhh...hhh.eeeee.........eeeeee....hhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..............ee..ee..hhhhhhhh.....hhhh....ee.......ee.hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhh...hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------ENOYL_COA_HYDRATASE  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------3HCDH  PDB: A:474-498    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) -----Exon 1.1  PDB: A:1-25    ----------------------------------Exon 1.3  PDB: A:60-116 UniProt: 60-116                  Exon 1.4  PDB: A:117-154              ----------------------------------Exon 1.6  PDB: A:189-303 UniProt: 189-303                                                                          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------Exon 1.2  PDB: A:25-60              ---------------------------------------------------------------------------------------------Exon 1.5  PDB: A:154-189            -----------------------------------------------------------------------------------------------------------------Exon 1.7  PDB: A:303-720 UniProt: 303-722 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                             Transcript 1 (2)
                 3zwc A  -4 PRGSHMAEYLRLPHSLAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIKFAQKIIDKPIEPRRIFNKPVPSLPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPLKEWQSLAGPHGS 720
                                     5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715

Chain B from PDB  Type:PROTEIN  Length:719
 aligned with ECHP_RAT | P07896 from UniProtKB/Swiss-Prot  Length:722

    Alignment length:719
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709         
             ECHP_RAT     - -MAEYLRLPHSLAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIKFAQKIIDKPIEPRRIFNKPVPSLPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPLKEWQSLAGPH 718
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....eeeeee........hhhhhhhhhhhhhhhhh.....eeeeee.........hhhhh.......hhhhhhhhhhh....eeeee..eeehhhhhhhhhh.eeeee...eeehhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh..eehhhhhhh....eee..hhhhhhhhhhhhh....hhhhhhhhh......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..................eeeee..hhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhhhhhhh.........eeeee.hhhhhh...eeee....hhhhhhhhhhhhhhhh....eeee.....hhhhhhh...hhh.eeeee.........eeeeee....hhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..............ee..ee..hhhhhhhhh....hhhh...eee.......eeehhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhh...hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ENOYL_COA_HYDRATASE  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------3HCDH  PDB: B:474-498    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) -Exon 1.1  PDB: B:1-25    ----------------------------------Exon 1.3  PDB: B:60-116 UniProt: 60-116                  Exon 1.4  PDB: B:117-154              ----------------------------------Exon 1.6  PDB: B:189-303 UniProt: 189-303                                                                          ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------Exon 1.2  PDB: B:25-60              ---------------------------------------------------------------------------------------------Exon 1.5  PDB: B:154-189            -----------------------------------------------------------------------------------------------------------------Exon 1.7  PDB: B:303-718 UniProt: 303-722 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                           Transcript 1 (2)
                 3zwc B   0 HMAEYLRLPHSLAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIKFAQKIIDKPIEPRRIFNKPVPSLPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPLKEWQSLAGPH 718
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3ZWC)

(no "CATH Domain" information available for 3ZWC)

(no "Pfam Domain" information available for 3ZWC)

Asymmetric Unit(hide GO term definitions)

Chain A,B (ECHP_RAT | P07896)

molecular function
	GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity	Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H(+).
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004165	dodecenoyl-CoA delta-isomerase activity	Catalysis of the reaction: 3-cis-dodecenoyl-CoA = 2-trans-dodecenoyl-CoA.
	GO:0004300	enoyl-CoA hydratase activity	Catalysis of the reaction: (3S)-3-hydroxyacyl-CoA = trans-2-enoyl-CoA + H2O.
	GO:0019899	enzyme binding	Interacting selectively and non-covalently with any enzyme.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0005102	receptor binding	Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
	GO:0006635	fatty acid beta-oxidation	A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively).
	GO:0006631	fatty acid metabolic process	The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
	GO:0006475	internal protein amino acid acetylation	The addition of an acetyl group to a non-terminal amino acid in a protein.
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0005777	peroxisome	A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

Asymmetric Unit
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	Cis Peptide Bonds
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		Ser A:434 - Pro A:435	[ RasMol ]
		Ser B:434 - Pro B:435	[ RasMol ]

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		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
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	3zwc
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
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	ECHP_RAT \| P07896
		Comparative Protein Structure Models	:	ModBase
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	1.1.1.35
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	4.2.1.17
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc
	5.3.3.8
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		Pathway	:	KEGG \| MetaCyc

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		Disease Information	:	OMIM

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		Domain Information	:	XDom
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	ECHP_RAT \| P07896
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UniProtKB/Swiss-Prot
	ECHP_RAT \| P07896	:	1zcj 2x58 3zw8 3zw9 3zwa 3zwb 5aaj 5mgb

1zcj	CRYSTAL STRUCTURE OF 3-HYDROXYACYL-COA DEHYDROGENASE
2x58	THE CRYSTAL STRUCTURE OF MFE1 LIGANDED WITH COA
3zw8	CRYSTAL STRUCTURE OF RAT PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 1 (RPMFE1) IN APO FORM
3zw9	CRYSTAL STRUCTURE OF RAT PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 1 (RPMFE1) COMPLEXED WITH (2S,3S)-3- HYDROXY-2-METHYLBUTANOYL-COA
3zwa	CRYSTAL STRUCTURE OF RAT PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 1 (RPMFE1) COMPLEXED WITH 3S-HYDROXY- HEXANOYL-COA
3zwb	CRYSTAL STRUCTURE OF RAT PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 1 (RPMFE1) COMPLEXED WITH 2TRANS-HEXENOYL- COA

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (7, 14)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (18, 18)

Visualization

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Still Images

Databases and Analysis Tools

Databases

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File