3ZQS - JenaLib

Title :   HUMAN FANCL CENTRAL DOMAIN

Authors :   C. Hodson, A. R. Cole, A. Purkiss-Trew, H. Walden

Date :   10 Jun 11 (Deposition) - 20 Jul 11 (Release) - 21 Sep 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)

Keywords :   Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Hodson, A. R. Cole, L. P. Lewis, J. A. Miles, A. Purkiss-Trew, H. Walden
Structural Analysis Of Human Fancl, The E3 Ligase In The Fanconi Anemia Pathway.
J. Biol. Chem. V. 286 32628 2011
PubMed-ID: 21775430 | Reference-DOI: 10.1074/JBC.M111.244632

Compounds

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE FANCL
	Chains	:	A, B
	EC Number	:	6.3.2.19
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector	:	PET28B
	Expression System Vector Type	:	PLASMID
	Fragment	:	URD, RESIDUES 109-294
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	FANCL, FANCONI ANEMIA GROUP L PROTEIN, FANCONI ANEMIA-ASSOCIATED POLYPEPTIDE OF 43 KDA, FAAP43

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 14)

Asymmetric Unit (3, 14)

No.	Name	Count	Type	Full Name
1	NA	2	Ligand/Ion	SODIUM ION
2	P6G	10	Ligand/Ion	HEXAETHYLENE GLYCOL
3	PRO	2	Mod. Amino Acid	PROLINE

Biological Unit 1 (2, 24)

No.	Name	Count	Type	Full Name
1	NA	-1	Ligand/Ion	SODIUM ION
2	P6G	20	Ligand/Ion	HEXAETHYLENE GLYCOL
3	PRO	4	Mod. Amino Acid	PROLINE

Sites (14, 14)

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:164 , TYR A:165 , PHE A:173 , CYS A:174 , P6G A:1298 , P6G A:1301 , HOH A:2211 , HOH B:2175	BINDING SITE FOR RESIDUE P6G A1295
02	AC2	SOFTWARE	GLY A:119 , THR A:120 , P6G A:1299 , HOH A:2012	BINDING SITE FOR RESIDUE P6G A1296
03	AC3	SOFTWARE	LEU A:191 , ALA A:192 , GLU A:195 , HOH A:2107 , HOH A:2115 , ARG B:269 , HOH B:2172	BINDING SITE FOR RESIDUE P6G A1297
04	AC4	SOFTWARE	PHE A:166 , VAL A:167 , PRO A:172 , PHE A:173 , P6G A:1295	BINDING SITE FOR RESIDUE P6G A1298
05	AC5	SOFTWARE	ILE A:115 , GLU A:116 , GLY A:119 , THR A:120 , TRP A:123 , P6G A:1296 , ALA B:129 , ASP B:130 , THR B:131 , PHE B:133	BINDING SITE FOR RESIDUE P6G A1299
06	AC6	SOFTWARE	SER A:196 , ARG A:243 , HOH A:2116 , HOH A:2119 , HOH A:2216 , ASN B:270 , HIS B:272	BINDING SITE FOR RESIDUE P6G A1300
07	AC7	SOFTWARE	PRO A:172 , PHE A:173 , CYS A:174 , ARG A:243 , P6G A:1295 , HIS B:272 , NA B:1296	BINDING SITE FOR RESIDUE P6G A1301
08	AC8	SOFTWARE	PRO A:170 , SER A:222 , THR A:224 , GLU A:239 , HOH A:2074 , HOH A:2075 , HOH A:2151 , HOH A:2152 , HOH A:2218	BINDING SITE FOR RESIDUE PRO A1302
09	AC9	SOFTWARE	TRP A:123 , LEU A:126 , HOH A:2013 , TRP B:123 , LEU B:126	BINDING SITE FOR RESIDUE NA B1295
10	BC1	SOFTWARE	CYS A:174 , P6G A:1301 , HOH A:2110 , HIS B:272 , TRP B:274	BINDING SITE FOR RESIDUE NA B1296
11	BC2	SOFTWARE	ASN A:232 , ASN A:233 , VAL A:259 , HOH A:2161 , GLU B:215 , PRO B:216 , ALA B:225 , ARG B:227 , ASN B:237 , GLU B:239 , GLU B:250 , HOH B:2113 , HOH B:2134	BINDING SITE FOR RESIDUE P6G B1297
12	BC3	SOFTWARE	VAL B:171 , TRP B:177 , PRO B:179 , SER B:196 , ALA B:199 , ARG B:243 , THR B:246 , HOH B:2081 , HOH B:2092 , HOH B:2178 , HOH B:2194	BINDING SITE FOR RESIDUE P6G B1298
13	BC4	SOFTWARE	VAL B:127 , TYR B:128 , LYS B:137 , LYS B:139 , GLU B:147 , HOH B:2026 , HOH B:2195	BINDING SITE FOR RESIDUE P6G B1299
14	BC5	SOFTWARE	TRP A:212 , ALA A:294 , HOH A:2160 , ARG B:227	BINDING SITE FOR RESIDUE PRO B1302

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 2)

Asymmetric Unit (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_052082	S	144	F	FANCL_HUMAN	Polymorphism	36059257	A/B	S	144	F

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_052082	S	144	F	FANCL_HUMAN	Polymorphism	36059257	A/B	S	144	F

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:187
 aligned with FANCL_HUMAN | Q9NW38 from UniProtKB/Swiss-Prot  Length:375

    Alignment length:188
                                   118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288        
         FANCL_HUMAN    109 QFYSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPARA  296
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhh...eeee.....eeeeeee.....eeeeeee..........eee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee.........eeeeeee..eeeeee..........eeeeeehhhhhhhhhhhhhhhh.......hhhhhhhhhhh.....-. Sec.struct. author
                 SAPs(SNPs) -----------------------------------F-------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3zqs A  109 QFYSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPA-P 1302
                                   118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288     | |
                                                                                                                                                                                                                   294 |
                                                                                                                                                                                                                    1302

Chain B from PDB  Type:PROTEIN  Length:187
 aligned with FANCL_HUMAN | Q9NW38 from UniProtKB/Swiss-Prot  Length:375

    Alignment length:188
                                   118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288        
         FANCL_HUMAN    109 QFYSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPARA  296
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh...eeee.....eeeeeee.....eeeeeee..........eee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee.........eeeeeee..eeeeee..........eeeee.hhhhhhhhhhhhhhhh.......hhhhhhhhhhh.....-. Sec.struct. author
                 SAPs(SNPs) -----------------------------------F-------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3zqs B  109 QFYSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPA-P 1302
                                   118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288     | |
                                                                                                                                                                                                                   294 |
                                                                                                                                                                                                                    1302

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (20, 20)

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	Cis Peptide Bonds
		Glu A:215 - Pro A:216	[ RasMol ]
		Glu B:215 - Pro B:216	[ RasMol ]
		Tyr A:158 - Pro A:159	[ RasMol ]
		Tyr B:158 - Pro B:159	[ RasMol ]

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