Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF PURPLE ACID PHOSPHATASE PPD1 ISOLATED FROM YELLOW LUPIN (LUPINUS LUTEUS) SEEDS
 
Authors :  S. V. Antonyuk, R. W. Strange
Date :  21 Jan 13  (Deposition) - 29 Jan 14  (Release) - 20 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (2x)
Keywords :  Three-Domain Heme-Cu Nitrite Reductase, Electron Transfer, Oxidoreductase, Proton Channel, Denitrification (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. V. Antonyuk, M. Olczak, T. Olczak, J. Ciuraszkiewicz, R. W. Strange
The Structure Of A Purple Acid Phosphatase Involved In Plant Growth And Pathogen Defence Exhibits A Novel Immunoglobulin-Like Fold
Iucrj V. 1 101 2014
PubMed-ID: 25075326  |  Reference-DOI: 10.1107/S205225251400400X

(-) Compounds

Molecule 1 - DIPHOSPHONUCLEOTIDE PHOSPHATASE 1
    Chains: A, B, C
    EC Number: 3.1.3.2
    Fragment: RESIDUES 46-615
    Organism Common: YELLOW LUPIN
    Organism Scientific: LUPINUS LUTEUS
    Organism Taxid: 3873
    Synonym: PURPLE ACID PHOSPHATASE

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 38)

Asymmetric Unit (6, 38)
No.NameCountTypeFull Name
1FE3Ligand/IonFE (III) ION
2FUC2Ligand/IonALPHA-L-FUCOSE
3GOL4Ligand/IonGLYCEROL
4MN3Ligand/IonMANGANESE (II) ION
5NAG23Ligand/IonN-ACETYL-D-GLUCOSAMINE
6PO43Ligand/IonPHOSPHATE ION
Biological Unit 1 (4, 64)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2FUC4Ligand/IonALPHA-L-FUCOSE
3GOL8Ligand/IonGLYCEROL
4MN-1Ligand/IonMANGANESE (II) ION
5NAG46Ligand/IonN-ACETYL-D-GLUCOSAMINE
6PO46Ligand/IonPHOSPHATE ION

(-) Sites  (28, 28)

Asymmetric Unit (28, 28)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:272 , ASP A:313 , TYR A:316 , HIS A:479 , MN A:801 , PO4 A:999BINDING SITE FOR RESIDUE FE A 800
02AC2SOFTWAREASP A:313 , ASN A:346 , HIS A:435 , HIS A:477 , FE A:800 , PO4 A:999BINDING SITE FOR RESIDUE MN A 801
03AC3SOFTWAREARG A:266 , LYS A:541 , THR A:543 , ARG A:555 , HOH A:2604 , HOH A:2646 , HOH A:2976 , TYR B:24BINDING SITE FOR RESIDUE GOL A 901
04AC4SOFTWARETHR A:493 , ASN A:494 , ASN A:503 , ASN A:505 , HOH A:2835 , HOH A:2854 , HOH A:2977 , HOH A:2979BINDING SITE FOR RESIDUE NAG A 903
05AC5SOFTWAREASP A:272 , ASP A:313 , TYR A:316 , ASN A:346 , HIS A:347 , HIS A:477 , HIS A:479 , FE A:800 , MN A:801 , HOH A:2679 , HOH A:2990BINDING SITE FOR RESIDUE PO4 A 999
06AC6SOFTWAREASN A:49 , PRO A:51 , ASP A:101 , THR A:102 , HOH A:2085 , HIS C:498BINDING SITE FOR RESIDUE GOL A1000
07AC7SOFTWAREGLN A:561 , HOH A:2915 , HOH A:2995 , HOH A:2996 , HOH A:2997 , SER B:96 , SER B:106BINDING SITE FOR RESIDUE GOL A1001
08AC8SOFTWAREASP B:272 , ASP B:313 , TYR B:316 , HIS B:479 , MN B:801 , PO4 B:999BINDING SITE FOR RESIDUE FE B 800
09AC9SOFTWAREASP B:313 , ASN B:346 , HIS B:435 , HIS B:477 , FE B:800 , PO4 B:999BINDING SITE FOR RESIDUE MN B 801
10BC1SOFTWAREASP B:272 , ASP B:313 , TYR B:316 , ASN B:346 , HIS B:347 , HIS B:477 , HIS B:479 , FE B:800 , MN B:801 , HOH B:2591 , HOH B:2876BINDING SITE FOR RESIDUE PO4 B 999
11BC2SOFTWAREASP C:272 , ASP C:313 , TYR C:316 , HIS C:479 , MN C:801 , PO4 C:999BINDING SITE FOR RESIDUE FE C 800
12BC3SOFTWAREASP C:313 , ASN C:346 , HIS C:435 , HIS C:477 , FE C:800 , PO4 C:999BINDING SITE FOR RESIDUE MN C 801
13BC4SOFTWAREILE C:53 , ASN C:93 , HOH C:2117 , HOH C:2639BINDING SITE FOR RESIDUE NAG C 802
14BC5SOFTWAREASN C:503 , ASN C:505 , HOH C:2552 , HOH C:2556 , HOH C:2622 , HOH C:2655BINDING SITE FOR RESIDUE NAG C 903
15BC6SOFTWAREASP C:272 , ASP C:313 , TYR C:316 , ASN C:346 , HIS C:347 , HIS C:477 , HIS C:479 , FE C:800 , MN C:801 , HOH C:2425 , HOH C:2659 , HOH C:2660BINDING SITE FOR RESIDUE PO4 C 999
16BC7SOFTWAREGLU B:380 , SER C:388 , LYS C:417 , SER C:421 , HOH C:2457 , HOH C:2661BINDING SITE FOR RESIDUE GOL C1000
17BC8SOFTWAREILE A:53 , TYR A:91 , ASN A:93 , HOH A:2227 , HOH A:2982 , HOH A:2983 , HOH A:2984BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 920 THROUGH NAG A 921 BOUND TO ASN A 93
18BC9SOFTWAREASN A:143 , ASN A:242 , THR A:244 , HOH A:2557 , HOH A:2989BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 940 THROUGH NAG A 941 BOUND TO ASN A 242
19CC1SOFTWAREPRO A:289 , ASN A:293 , PHE A:537 , SER A:558 , HOH A:2636 , HOH A:2893 , HOH A:2968 , HOH A:2969 , HOH A:2970 , HOH A:2971 , HOH A:2972 , HOH A:2973 , HOH A:2974 , HOH A:2975BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 808 THROUGH NAG A 809 BOUND TO ASN A 293
20CC2SOFTWAREPRO A:524 , ASN A:526 , HOH A:2980 , HOH A:2981BINDING SITE FOR MONO-SACCHARIDE NAG A 905 BOUND TO ASN A 526
21CC3SOFTWAREILE B:53 , TYR B:91 , ASN B:93 , LYS B:100 , HOH B:2201 , HOH B:2854 , HOH B:2855 , HOH B:2856 , HOH B:2857BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B 805 THROUGH NAG B 806 BOUND TO ASN B 93
22CC4SOFTWAREASN B:143 , ASN B:242 , THR B:244 , HOH B:2865 , HOH B:2866BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B 812 THROUGH FUC B 815 BOUND TO ASN B 242
23CC5SOFTWAREPRO B:289 , ASN B:293 , PHE B:537 , SER B:558 , HOH B:2553 , HOH B:2800 , HOH B:2859 , HOH B:2860 , HOH B:2861 , HOH B:2862 , HOH B:2863 , HOH B:2864BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B 808 THROUGH NAG B 809 BOUND TO ASN B 293
24CC6SOFTWAREASN B:503 , ASN B:505 , HOH B:2736 , HOH B:2738 , HOH B:2761 , HOH B:2836 , HOH B:2868BINDING SITE FOR MONO-SACCHARIDE NAG B 903 BOUND TO ASN B 505
25CC7SOFTWAREPRO B:524 , ASN B:526 , HOH B:2870 , HOH B:2871 , HOH B:2872BINDING SITE FOR MONO-SACCHARIDE NAG B 925 BOUND TO ASN B 526
26CC8SOFTWAREASN C:242 , THR C:244 , HOH C:2648 , HOH C:2650 , HOH C:2651 , HOH C:2653 , HOH C:2654BINDING SITE FOR MONO-SACCHARIDE NAG C 814 BOUND TO ASN C 242
27CC9SOFTWAREPRO C:289 , ASN C:293 , PHE C:537 , SER C:558 , HOH C:2392 , HOH C:2589 , HOH C:2642 , HOH C:2643 , HOH C:2644 , HOH C:2645BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 808 THROUGH NAG C 809 BOUND TO ASN C 293
28DC1SOFTWAREPRO C:524 , ASN C:526 , HOH C:2572 , HOH C:2658BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 925 THROUGH FUC C 928 BOUND TO ASN C 526

(-) SS Bonds  (15, 15)

Asymmetric Unit
No.Residues
1A:70 -A:83
2A:203 -A:367
3A:397 -A:418
4A:485 -A:492
5A:578 -A:583
6B:70 -B:83
7B:203 -B:367
8B:397 -B:418
9B:485 -B:492
10B:578 -B:583
11C:70 -C:83
12C:203 -C:367
13C:397 -C:418
14C:485 -C:492
15C:578 -C:583

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Thr A:28 -Pro A:29
2Ser A:61 -Pro A:62
3Pro A:79 -Pro A:80
4Ala A:205 -Pro A:206
5Thr B:28 -Pro B:29
6Ser B:61 -Pro B:62
7Pro B:79 -Pro B:80
8Ala B:205 -Pro B:206
9Thr C:28 -Pro C:29
10Ser C:61 -Pro C:62
11Pro C:79 -Pro C:80
12Ala C:205 -Pro C:206

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ZK4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ZK4)

(-) Exons   (0, 0)

(no "Exon" information available for 3ZK4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:569
 aligned with Q8VX11_LUPLU | Q8VX11 from UniProtKB/TrEMBL  Length:615

    Alignment length:569
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606         
         Q8VX11_LUPLU    47 HAYIKATPNVLGFEGHYTEWVTLQYSNNKPSIDDWIGVFSPANFSASTCPGENKMTNPPFLCSAPIKFQYANFSSHSYKDTGKGSLKLQLINQRSDFSFALFTGGLTNPKLIAVSNKVSFVNPNAPVYPRLAQGKTWDEITVTWTSGYDINDAEPFVEWGPKEGNLVKTPAGTLTFDRNTMCGAPARTVGWRDPGYIHTSFLKELWPNREYTYKLGHRLFNGTTIWSKEYHFKASPYPGQSSVQRVVIFGDMGKAEADGSNEYNNFQPGSLNTTKQIIQDLEDIDIVFHIGDLCYANGYISQWDQFTAQIEPIASTVPYMTASGNHERDWPGTGSFYGNLDSGGECGVPAQTMFFVPAENREKFWYSTDYGMFRFCIAHTELDWRKGTEQYEFIEKCLASVDRQKQPWLIFLAHRVLGYSSAGFYVQEGSFEEPMGREDLQHLWQKYKVDIAMYGHVHNYERTCPIYQNVCTNKEKHNYKGNLNGTIHVVVGGGGASLAEFAPINTTWSIFKDHDFGFVKLTAFDHSNLLLEYRKSSDGQVYDSFTISRDYRDILACSVDSCPTTTLAS 615
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eehhhhh.eeeeeeeee........eeeee...........................eeee......hhhhhheeeeeeeee......eeeeee......eeeee....ee......eeeeeee......eeeeeee......eeeeeeeee.....eeeeeeee..hhhhh..............eeeeeee.......eeeeeeeeee....eee...eeee..........eeeeee...................hhhhhhhhhhhhhhhh.eeeee..........hhhhhhhhhhhhhhh...eeee.hhhhhh.................hhhhhhhh...........eeeee..eeeee..........hhhhhhhhhhhhh.......eeeeee........hhhhhhh..........hhhhhhhhh...eeee.....eeee..ee..ee......eee......eeeee.................eeeee...eeeeeeeee..eeeeeeee.....eeeeeeee.hhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zk4 A  22 HAYIKATPNVLGFEGHYTEWVTLQYSNNKPSIDDWIGVFSPANFSASTCPGENKMTNPPFLCSAPIKFQYANFSSHSYKDTGKGSLKLQLINQRSDFSFALFTGGLTNPKLIAVSNKVSFVNPNAPVYPRLAQGKTWDEITVTWTSGYDINDAEPFVEWGPKEGNLVKTPAGTLTFDRNTMCGAPARTVGWRDPGYIHTSFLKELWPNREYTYKLGHRLFNGTTIWSKEYHFKASPYPGQSSVQRVVIFGDMGKAEADGSNEYNNFQPGSLNTTKQIIQDLEDIDIVFHIGDLCYANGYISQWDQFTAQIEPIASTVPYMTASGNHERDWPGTGSFYGNLDSGGECGVPAQTMFFVPAENREKFWYSTDYGMFRFCIAHTELDWRKGTEQYEFIEKCLASVDRQKQPWLIFLAHRVLGYSSAGFYVQEGSFEEPMGREDLQHLWQKYKVDIAMYGHVHNYERTCPIYQNVCTNKEKHNYKGNLNGTIHVVVGGGGASLAEFAPINTTWSIFKDHDFGFVKLTAFDHSNLLLEYRKSSDGQVYDSFTISRDYRDILACSVDSCPTTTLAS 590
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581         


Chain B from PDB  Type:PROTEIN  Length:571
 aligned with Q8VX11_LUPLU | Q8VX11 from UniProtKB/TrEMBL  Length:615

    Alignment length:571
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614 
         Q8VX11_LUPLU    45 DEHAYIKATPNVLGFEGHYTEWVTLQYSNNKPSIDDWIGVFSPANFSASTCPGENKMTNPPFLCSAPIKFQYANFSSHSYKDTGKGSLKLQLINQRSDFSFALFTGGLTNPKLIAVSNKVSFVNPNAPVYPRLAQGKTWDEITVTWTSGYDINDAEPFVEWGPKEGNLVKTPAGTLTFDRNTMCGAPARTVGWRDPGYIHTSFLKELWPNREYTYKLGHRLFNGTTIWSKEYHFKASPYPGQSSVQRVVIFGDMGKAEADGSNEYNNFQPGSLNTTKQIIQDLEDIDIVFHIGDLCYANGYISQWDQFTAQIEPIASTVPYMTASGNHERDWPGTGSFYGNLDSGGECGVPAQTMFFVPAENREKFWYSTDYGMFRFCIAHTELDWRKGTEQYEFIEKCLASVDRQKQPWLIFLAHRVLGYSSAGFYVQEGSFEEPMGREDLQHLWQKYKVDIAMYGHVHNYERTCPIYQNVCTNKEKHNYKGNLNGTIHVVVGGGGASLAEFAPINTTWSIFKDHDFGFVKLTAFDHSNLLLEYRKSSDGQVYDSFTISRDYRDILACSVDSCPTTTLAS 615
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..eehhhhh.eeeeeeeee........eeeee...........................eeee......hhhhhheeeeeeeee......eeeeee......eeeee....ee......eeeeeee......eeeeeee......eeeeeeeee.....eeeeeeee..hhhhh..............eeeeeee.......eeeeeeeeee....eee...eeee..........eeeeee...................hhhhhhhhhhhhhhhh.eeeee..........hhhhhhhhhhhhhhh...eeee.hhhhhh.................hhhhhhhh...........eeeee..eeeee..........hhhhhhhhhhhhhh......eeeeee........hhhhhhh..........hhhhhhhhh...eeee.....eeee..ee..ee......eee......eeeee.................eeeee...eeeeeeeee..eeeeeeee.....eeeeeeee.hhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zk4 B  20 DEHAYIKATPNVLGFEGHYTEWVTLQYSNNKPSIDDWIGVFSPANFSASTCPGENKMTNPPFLCSAPIKFQYANFSSHSYKDTGKGSLKLQLINQRSDFSFALFTGGLTNPKLIAVSNKVSFVNPNAPVYPRLAQGKTWDEITVTWTSGYDINDAEPFVEWGPKEGNLVKTPAGTLTFDRNTMCGAPARTVGWRDPGYIHTSFLKELWPNREYTYKLGHRLFNGTTIWSKEYHFKASPYPGQSSVQRVVIFGDMGKAEADGSNEYNNFQPGSLNTTKQIIQDLEDIDIVFHIGDLCYANGYISQWDQFTAQIEPIASTVPYMTASGNHERDWPGTGSFYGNLDSGGECGVPAQTMFFVPAENREKFWYSTDYGMFRFCIAHTELDWRKGTEQYEFIEKCLASVDRQKQPWLIFLAHRVLGYSSAGFYVQEGSFEEPMGREDLQHLWQKYKVDIAMYGHVHNYERTCPIYQNVCTNKEKHNYKGNLNGTIHVVVGGGGASLAEFAPINTTWSIFKDHDFGFVKLTAFDHSNLLLEYRKSSDGQVYDSFTISRDYRDILACSVDSCPTTTLAS 590
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589 


Chain C from PDB  Type:PROTEIN  Length:568
 aligned with Q8VX11_LUPLU | Q8VX11 from UniProtKB/TrEMBL  Length:615

    Alignment length:568
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607        
         Q8VX11_LUPLU    48 AYIKATPNVLGFEGHYTEWVTLQYSNNKPSIDDWIGVFSPANFSASTCPGENKMTNPPFLCSAPIKFQYANFSSHSYKDTGKGSLKLQLINQRSDFSFALFTGGLTNPKLIAVSNKVSFVNPNAPVYPRLAQGKTWDEITVTWTSGYDINDAEPFVEWGPKEGNLVKTPAGTLTFDRNTMCGAPARTVGWRDPGYIHTSFLKELWPNREYTYKLGHRLFNGTTIWSKEYHFKASPYPGQSSVQRVVIFGDMGKAEADGSNEYNNFQPGSLNTTKQIIQDLEDIDIVFHIGDLCYANGYISQWDQFTAQIEPIASTVPYMTASGNHERDWPGTGSFYGNLDSGGECGVPAQTMFFVPAENREKFWYSTDYGMFRFCIAHTELDWRKGTEQYEFIEKCLASVDRQKQPWLIFLAHRVLGYSSAGFYVQEGSFEEPMGREDLQHLWQKYKVDIAMYGHVHNYERTCPIYQNVCTNKEKHNYKGNLNGTIHVVVGGGGASLAEFAPINTTWSIFKDHDFGFVKLTAFDHSNLLLEYRKSSDGQVYDSFTISRDYRDILACSVDSCPTTTLAS 615
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eehhhhh.eeeeeeeee........eeeee...........................eeee....hhhhhhhheeeeeeeee....eeeeeeee......eeeee...eee......eeeeeee......eeeeeee......eeeeeeeee.....eeeeeeee..hhhhh..............eeeeeee.......eeeeeeeeee....eee...eeee..........eeeeee...................hhhhhhhhhhhhhhhh.eeeee..........hhhhhhhhhhhhhhh...eeee.hhhhhh.................hhhhhhhh...........eeeee..eeeee..........hhhhhhhhhhhhhh......eeeeee........hhhhhhh..........hhhhhhhhh...eeee.....eeee..ee..ee......eee......eeeee.................eeeee...eeeeeeeee..eeeeeeee.....eeeeeeee.hhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zk4 C  23 AYIKATPNVLGFEGHYTEWVTLQYSNNKPSIDDWIGVFSPANFSASTCPGENKMTNPPFLCSAPIKFQYANFSSHSYKDTGKGSLKLQLINQRSDFSFALFTGGLTNPKLIAVSNKVSFVNPNAPVYPRLAQGKTWDEITVTWTSGYDINDAEPFVEWGPKEGNLVKTPAGTLTFDRNTMCGAPARTVGWRDPGYIHTSFLKELWPNREYTYKLGHRLFNGTTIWSKEYHFKASPYPGQSSVQRVVIFGDMGKAEADGSNEYNNFQPGSLNTTKQIIQDLEDIDIVFHIGDLCYANGYISQWDQFTAQIEPIASTVPYMTASGNHERDWPGTGSFYGNLDSGGECGVPAQTMFFVPAENREKFWYSTDYGMFRFCIAHTELDWRKGTEQYEFIEKCLASVDRQKQPWLIFLAHRVLGYSSAGFYVQEGSFEEPMGREDLQHLWQKYKVDIAMYGHVHNYERTCPIYQNVCTNKEKHNYKGNLNGTIHVVVGGGGASLAEFAPINTTWSIFKDHDFGFVKLTAFDHSNLLLEYRKSSDGQVYDSFTISRDYRDILACSVDSCPTTTLAS 590
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3ZK4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ZK4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ZK4)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (Q8VX11_LUPLU | Q8VX11)
molecular function
    GO:0003993    acid phosphatase activity    Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    FE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FUC  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala A:205 - Pro A:206   [ RasMol ]  
    Ala B:205 - Pro B:206   [ RasMol ]  
    Ala C:205 - Pro C:206   [ RasMol ]  
    Pro A:79 - Pro A:80   [ RasMol ]  
    Pro B:79 - Pro B:80   [ RasMol ]  
    Pro C:79 - Pro C:80   [ RasMol ]  
    Ser A:61 - Pro A:62   [ RasMol ]  
    Ser B:61 - Pro B:62   [ RasMol ]  
    Ser C:61 - Pro C:62   [ RasMol ]  
    Thr A:28 - Pro A:29   [ RasMol ]  
    Thr B:28 - Pro B:29   [ RasMol ]  
    Thr C:28 - Pro C:29   [ RasMol ]  
 
Biological Unit
  Complete Structure
    Biological Unit 1  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3zk4
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q8VX11_LUPLU | Q8VX11
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  3.1.3.2
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q8VX11_LUPLU | Q8VX11
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3ZK4)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3ZK4)