3ZJX - JenaLib

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Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CLOSTRIDIUM PERFRINGENS EPSILON TOXIN MUTANT H149A BOUND TO OCTYL GLUCOSIDE

Authors :   M. Bokori-Brown, M. C. Kokkinidou, C. G. Savva, S. P. Fernandes Da Cos C. E. Naylor, A. R. Cole, A. K. Basak, R. W. Titball

Date :   20 Jan 13 (Deposition) - 27 Mar 13 (Release) - 01 Apr 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Toxin, Pore Forming Toxin, Enterotoxemia, Aerolysin Family (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Bokori-Brown, M. C. Kokkinidou, C. G. Savva, S. P. Da Costa, C. E. Naylor, A. R. Cole, D. S. Moss, A. K. Basak, R. W. Titball
Clostridium Perfringens Epsilon Toxin H149A Mutant As A Platform For Receptor Binding Studies.
Protein Sci. V. 22 650 2013
PubMed-ID: 23504825 | Reference-DOI: 10.1002/PRO.2250

Molecule 1 - EPSILON-TOXIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PHIS PARALLEL II
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Mutation	:	YES
	Organism Scientific	:	CLOSTRIDIUM PERFRINGENS D
	Organism Taxid	:	107819
	Strain	:	NCTC 8346

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	BOG	4	Ligand/Ion	B-OCTYLGLUCOSIDE
2	PO4	4	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	BOG	1	Ligand/Ion	B-OCTYLGLUCOSIDE
2	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	BOG	1	Ligand/Ion	B-OCTYLGLUCOSIDE
2	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	BOG	1	Ligand/Ion	B-OCTYLGLUCOSIDE
2	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 4 (2, 2)

No.	Name	Count	Type	Full Name
1	BOG	1	Ligand/Ion	B-OCTYLGLUCOSIDE
2	PO4	1	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:74 , VAL A:85 , LYS A:87 , SER A:102 , PHE A:105 , THR A:106 , VAL A:179 , HOH A:2053	BINDING SITE FOR RESIDUE BOG A1297
2	AC2	SOFTWARE	GLU B:74 , VAL B:85 , SER B:102 , PHE B:105 , THR B:106 , VAL B:179 , HOH B:2043 , HOH B:2045	BINDING SITE FOR RESIDUE BOG B1296
3	AC3	SOFTWARE	VAL C:85 , GLY C:86 , SER C:102 , PHE C:105 , THR C:106 , VAL C:179 , HOH C:2128	BINDING SITE FOR RESIDUE BOG C1296
4	AC4	SOFTWARE	VAL D:85 , GLY D:86 , LYS D:87 , PHE D:105 , THR D:106 , VAL D:179 , HOH D:2110 , HOH D:2111	BINDING SITE FOR RESIDUE BOG D1296
5	AC5	SOFTWARE	ASP C:61 , SER C:201 , LYS C:218 , GLN D:98	BINDING SITE FOR RESIDUE PO4 C1297
6	AC6	SOFTWARE	GLN A:98 , ASP B:61 , SER B:201 , LYS B:218 , HOH B:2078 , HOH B:2080	BINDING SITE FOR RESIDUE PO4 B1297
7	AC7	SOFTWARE	GLN C:98 , HOH C:2050 , ASP D:61 , SER D:201 , LYS D:218	BINDING SITE FOR RESIDUE PO4 D1297
8	AC8	SOFTWARE	ASP A:61 , SER A:201 , LYS A:218 , HOH A:2095 , HOH A:2118 , GLN B:98	BINDING SITE FOR RESIDUE PO4 A1298

(no "SS Bond" information available for 3ZJX)

(no "Cis Peptide Bond" information available for 3ZJX)

(no "SAP(SNP)/Variant" information available for 3ZJX)

(no "PROSITE Motif" information available for 3ZJX)

(no "Exon" information available for 3ZJX)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:277
 aligned with E7D8R1_CLOPF | E7D8R1 from UniProtKB/TrEMBL  Length:334

    Alignment length:284
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324    
         E7D8R1_CLOPF    45 KKASYDNVDTLIEKGRYNTKYNYLKRMEKYYPNAMAYFDKVTINPQGNDFYINNPKVELDGEPSMNYLEDVYVGKALLTNDTQQEQKLKSQSFTCKNTDTVTATTTHTVGTSIQATAKFTVPFNETGVSLTTSYSFANTNTNTNSKEITHNVPSQDILVPANTTVEVIAYLKKVNVKGNVKLVGQVSGSEWGEIPSYLAFPRDGYKFSLSDTVNKSDLNEDGTININGKGNYSAVMGDELIVKVRNLNTNNVQEYVIPVDKKEKSNDSNIVKYRSLSIKAPGIK 328
               SCOP domains d3zjxa_ A: automated matches                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhh....hhhhhh.....eeeee..eeeeeeeee....eeee...eeeeeeeeee.....eeee...eeeeeeeeeeeeeee........eeeee..........eeeee.....eeeeeeeeeeee...eeee...eeeeeeeeeeeeeeeeeeeeeeeee.eeeeee........eeeeee.hhh.hhhhh.....eeeeeeeeeeeeeeeeeeeeeee.....eeeee..eee.-------.eee...eee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zjx A  13 AMASYDNVDTLIEKGRYNTKYNYLKRMEKYYPNAMAYFDKVTINPQGNDFYINNPKVELDGEPSMNYLEDVYVGKALLTNDTQQEQKLKSQSFTCKNTDTVTATTTHTVGTSIQATAKFTVPFNETGVSLTTSYSFANTNTNTNSKEITANVPSQDILVPANTTVEVIAYLKKVNVKGNVKLVGQVSGSEWGEIPSYLAFPRDGYKFSLSDTVNKSDLNEDGTININGKGNYSAVMGDELIVKVRNLNTNNVQEYVIPVDKI-------IVKYRSLSIKAPGIK 296
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272 |     282       292    
                                                                                                                                                                                                                                                                                               274     282

Chain B from PDB  Type:PROTEIN  Length:276
 aligned with E7D8R1_CLOPF | E7D8R1 from UniProtKB/TrEMBL  Length:334

    Alignment length:282
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325  
         E7D8R1_CLOPF    46 KASYDNVDTLIEKGRYNTKYNYLKRMEKYYPNAMAYFDKVTINPQGNDFYINNPKVELDGEPSMNYLEDVYVGKALLTNDTQQEQKLKSQSFTCKNTDTVTATTTHTVGTSIQATAKFTVPFNETGVSLTTSYSFANTNTNTNSKEITHNVPSQDILVPANTTVEVIAYLKKVNVKGNVKLVGQVSGSEWGEIPSYLAFPRDGYKFSLSDTVNKSDLNEDGTININGKGNYSAVMGDELIVKVRNLNTNNVQEYVIPVDKKEKSNDSNIVKYRSLSIKAPGI 327
               SCOP domains d3zjxb_ B: automated matches                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhh....hhhhhh.....eeeee..eeeeeeeee....eeee...eeeeeeeeee.....eeee...eeeeeeeeeeeeeee........eeeee..........eeeee.....eeeeeeeeeeee...eeee...eeeeeeeeeeeeeeeeeeeeeeeee.eeeeee........eeeeee.hhh.hhhhh.....eeeeeeeeeeeeeeeeeeeeeee.....eeeee..eee.------.eeee...eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zjx B  14 MASYDNVDTLIEKGRYNTKYNYLKRMEKYYPNAMAYFDKVTINPQGNDFYINNPKVELDGEPSMNYLEDVYVGKALLTNDTQQEQKLKSQSFTCKNTDTVTATTTHTVGTSIQATAKFTVPFNETGVSLTTSYSFANTNTNTNSKEITANVPSQDILVPANTTVEVIAYLKKVNVKGNVKLVGQVSGSEWGEIPSYLAFPRDGYKFSLSDTVNKSDLNEDGTININGKGNYSAVMGDELIVKVRNLNTNNVQEYVIPVDKI------NIVKYRSLSIKAPGI 295
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273|      283       293  
                                                                                                                                                                                                                                                                                              274    281

Chain C from PDB  Type:PROTEIN  Length:276
 aligned with E7D8R1_CLOPF | E7D8R1 from UniProtKB/TrEMBL  Length:334

    Alignment length:282
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325  
         E7D8R1_CLOPF    46 KASYDNVDTLIEKGRYNTKYNYLKRMEKYYPNAMAYFDKVTINPQGNDFYINNPKVELDGEPSMNYLEDVYVGKALLTNDTQQEQKLKSQSFTCKNTDTVTATTTHTVGTSIQATAKFTVPFNETGVSLTTSYSFANTNTNTNSKEITHNVPSQDILVPANTTVEVIAYLKKVNVKGNVKLVGQVSGSEWGEIPSYLAFPRDGYKFSLSDTVNKSDLNEDGTININGKGNYSAVMGDELIVKVRNLNTNNVQEYVIPVDKKEKSNDSNIVKYRSLSIKAPGI 327
               SCOP domains d3zjxc_ C: automated matches                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhh....hhhhhh.....eeeee..eeeeeeeee....eeee...eeeeeeeeee.....eeee...eeeeeeeeeeeeeee........eeeee..........eeeee.....eeeeeeeeeeee...eeee...eeeeeeeeeeeeeeeeeeeeeeeee.eeeeee........eeeeee.hhhhhhhhh.....eeeeeeeeeeeeeeeeeeeeeee.....eeeee..eee.------.eeee...eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zjx C  14 MASYDNVDTLIEKGRYNTKYNYLKRMEKYYPNAMAYFDKVTINPQGNDFYINNPKVELDGEPSMNYLEDVYVGKALLTNDTQQEQKLKSQSFTCKNTDTVTATTTHTVGTSIQATAKFTVPFNETGVSLTTSYSFANTNTNTNSKEITANVPSQDILVPANTTVEVIAYLKKVNVKGNVKLVGQVSGSEWGEIPSYLAFPRDGYKFSLSDTVNKSDLNEDGTININGKGNYSAVMGDELIVKVRNLNTNNVQEYVIPVDKI------NIVKYRSLSIKAPGI 295
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273|      283       293  
                                                                                                                                                                                                                                                                                              274    281

Chain D from PDB  Type:PROTEIN  Length:272
 aligned with E7D8R1_CLOPF | E7D8R1 from UniProtKB/TrEMBL  Length:334

    Alignment length:282
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325  
         E7D8R1_CLOPF    46 KASYDNVDTLIEKGRYNTKYNYLKRMEKYYPNAMAYFDKVTINPQGNDFYINNPKVELDGEPSMNYLEDVYVGKALLTNDTQQEQKLKSQSFTCKNTDTVTATTTHTVGTSIQATAKFTVPFNETGVSLTTSYSFANTNTNTNSKEITHNVPSQDILVPANTTVEVIAYLKKVNVKGNVKLVGQVSGSEWGEIPSYLAFPRDGYKFSLSDTVNKSDLNEDGTININGKGNYSAVMGDELIVKVRNLNTNNVQEYVIPVDKKEKSNDSNIVKYRSLSIKAPGI 327
               SCOP domains d3zjxd_ D: automated matches                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhh..----.........eeeee..eeeeeeeee....eeee...eeeeeeeeee.....eeee...eeeeeeeeeeeeeee........eeeee..........eeeee.....eeeeeeeeeeee...eeee...eeeeeeeeeeeeeeeeeeeeeeeee.eeeeee........eeeeee.hhh.hhhhh.....eeeeeeeeeeeeeeeeeeeeeee.....eeeee......------.eee....eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zjx D  14 MASYDNVDTLIEKGRYNTKYNYLKRMEKY----MAYFDKVTINPQGNDFYINNPKVELDGEPSMNYLEDVYVGKALLTNDTQQEQKLKSQSFTCKNTDTVTATTTHTVGTSIQATAKFTVPFNETGVSLTTSYSFANTNTNTNSKEITANVPSQDILVPANTTVEVIAYLKKVNVKGNVKLVGQVSGSEWGEIPSYLAFPRDGYKFSLSDTVNKSDLNEDGTININGKGNYSAVMGDELIVKVRNLNTNNVQEYVIPVDKI------NIVKYRSLSIKAPGI 295
                                    23        33        |-   |    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273|      283       293  
                                                       42   47                                                                                                                                                                                                                                274    281

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

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Class: Membrane and cell surface proteins and peptides (2046)

Fold: Aerolisin/ETX pore-forming domain (9)

Superfamily: Aerolisin/ETX pore-forming domain (9)

Family: ETX/MTX2 (2)

Protein domain: automated matches (1)

Clostridium perfringens [TaxId: 107819] (1)

1a	d3zjxa_	A:
1b	d3zjxb_	B:
1c	d3zjxc_	C:
1d	d3zjxd_	D:

(no "CATH Domain" information available for 3ZJX)

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