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(-)Asym./Biol. Unit
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(-) Description

Title :  BACILLUS SUBTILIS SEPF, C-TERMINAL DOMAIN
 
Authors :  R. E. Duman, S. Ishikawa, I. Celik, N. Ogasawara, J. Lowe, L. W. Hamoen
Date :  09 Jan 13  (Deposition) - 27 Nov 13  (Release) - 11 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Duman, S. Ishikawa, I. Celik, H. Strahl, N. Ogasawara, P. Troc, J. Lowe, L. W. Hamoen
Structural And Genetic Analyses Reveal The Protein Sepf As A New Membrane Anchor For The Z Ring.
Proc. Natl. Acad. Sci. Usa V. 110 E4601 2013
PubMed-ID: 24218584  |  Reference-DOI: 10.1073/PNAS.1313978110

(-) Compounds

Molecule 1 - CELL DIVISION PROTEIN SEPF
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Variant: C41
    Expression System Vector: PHIS17
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL DOMAIN, RESIDUES 57-151
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Synonym: SEPF FROM BACILLUS SUBTILIS

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3ZIH)

(-) Sites  (0, 0)

(no "Site" information available for 3ZIH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ZIH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3ZIH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ZIH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ZIH)

(-) Exons   (0, 0)

(no "Exon" information available for 3ZIH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:79
 aligned with SEPF_BACSU | O31728 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:79
                                    70        80        90       100       110       120       130         
           SEPF_BACSU    61 SSKVVLSEPRVYAEAQEIADHLKNRRAVVVNLQRIQHDQAKRIVDFLSGTVYAIGGDIQRIGSDIFLCTPDNVDVSGTI 139
               SCOP domains ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...hhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhhhhh.eeeeee..eeeee...eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 3zih A  61 SSKVVLSEPRVYAEAQEIADHLKNRRAVVVNLQRIQHDQAKRIVDFLSGTVYAIGGDIQRIGSDIFLCTPDNVDVSGTI 139
                                    70        80        90       100       110       120       130         


Chain B from PDB  Type:PROTEIN  Length:80
 aligned with SEPF_BACSU | O31728 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:80
                                    70        80        90       100       110       120       130       140
           SEPF_BACSU    61 SSKVVLSEPRVYAEAQEIADHLKNRRAVVVNLQRIQHDQAKRIVDFLSGTVYAIGGDIQRIGSDIFLCTPDNVDVSGTIS 140
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...hhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhhhhh.eeeeee..eeeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                 3zih B  61 SSKVVLSEPRVYAEAQEIADHLKNRRAVVVNLQRIQHDQAKRIVDFLSGTVYAIGGDIQRIGSDIFLCTPDNVDVSGTIS 140
                                    70        80        90       100       110       120       130       140
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3ZIH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ZIH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ZIH)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (SEPF_BACSU | O31728)
molecular function
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0043093    FtsZ-dependent cytokinesis    A cytokinesis process that involves a set of conserved proteins including FtsZ, and results in the formation of two similarly sized and shaped cells.
    GO:0000917    barrier septum assembly    The assembly and arrangement of a septum that spans the plasma membrane interface between progeny cells following cytokinesis. The progeny cells that form a barrier septum are not able to exchange intracellular material.
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0090529    cell septum assembly    The assembly and arrangement of a cellular component that is composed of peptidoglycan and often chitin in addition to other materials and usually forms perpendicular to the long axis of a cell or hypha. It grows centripetally from the cell wall to the center of the cell and often functions in the compartmentalization of a cell into two daughter cells.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  3zih
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  SEPF_BACSU | O31728
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SEPF_BACSU | O31728: 3zii

(-) Related Entries Specified in the PDB File

3zie SEPF-LIKE PROTEIN FROM ARCHAEOGLOBUS FULGIDUS
3zig SEPF-LIKE PROTEIN FROM PYROCOCCUS FURIOSUS
3zii BACILLUS SUBTILIS SEPF G109K, C-TERMINAL DOMAIN