3ZBH - JenaLib

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Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   GEOBACILLUS THERMODENITRIFICANS ESXA CRYSTAL FORM I

Authors :   W. M. Ng, M. Zoltner, T. Palmer, W. N. Hunter

Date :   09 Nov 12 (Deposition) - 21 Nov 12 (Release) - 21 Nov 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.94

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: G,H  (1x)
Biol. Unit 3: C,D  (1x)
Biol. Unit 4: E,F  (1x)

Keywords :   Unknown Function, Type 7 Secretion, Esat6 Family Proteins, Wxg Protein Ess (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Zoltner, W. M. Ng, T. Palmer, W. N. Hunter
Crystal Structure Of The Homodimeric Esat-6-Family Proteins Esxa And Esxb From Geobacillus Thermodenitrificans
To Be Published
PubMed: search

Molecule 1 - ESXA
	Chains	:	A, B, C, D, E, F, G, H
	Organism Scientific	:	GEOBACILLUS THERMODENITRIFICANS
	Organism Taxid	:	33940
	Other Details	:	SYNTHETIC GENE (CODON ADAPTED)
	Strain	:	NG80-2
	Synthetic	:	YES

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:							G	H
Biological Unit 3 (1x)	:			C	D
Biological Unit 4 (1x)	:					E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	ACT	6	Ligand/Ion	ACETATE ION
2	PO4	2	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (2, 6)

No.	Name	Count	Type	Full Name
1	ACT	4	Ligand/Ion	ACETATE ION
2	PO4	2	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	PO4	-1	Ligand/Ion	PHOSPHATE ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	PO4	-1	Ligand/Ion	PHOSPHATE ION

Biological Unit 4 (0, 0)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	PO4	-1	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:37 , PHE A:52 , ILE A:53 , TYR A:56 , TYR B:19	BINDING SITE FOR RESIDUE ACT A1097
2	AC2	SOFTWARE	GLN A:35 , THR A:39 , HOH A:2011 , GLN B:18 , ACT B:1097	BINDING SITE FOR RESIDUE PO4 A1098
3	AC3	SOFTWARE	ARG B:60 , GLU B:64 , HOH B:2052 , GLN G:75	BINDING SITE FOR RESIDUE ACT B1096
4	AC4	SOFTWARE	SER C:37 , PHE C:52 , ILE C:53 , TYR C:56 , TYR D:19	BINDING SITE FOR RESIDUE ACT C1098
5	AC5	SOFTWARE	HIS A:38 , ARG F:13 , ARG F:17 , HIS F:78	BINDING SITE FOR RESIDUE PO4 A1099
6	AC6	SOFTWARE	ASN G:25 , ARG G:32 , HOH G:2020 , HOH G:2021 , ASN H:25 , ARG H:32 , HOH H:2008	BINDING SITE FOR RESIDUE ACT H1098
7	AC7	SOFTWARE	PO4 A:1098 , GLU B:11 , GLY B:14 , VAL B:15 , GLN B:18 , HOH B:2008	BINDING SITE FOR RESIDUE ACT B1097
8	AC8	SOFTWARE	ARG B:17 , HIS B:78	BINDING SITE FOR RESIDUE ACT B1098

(no "SS Bond" information available for 3ZBH)

(no "Cis Peptide Bond" information available for 3ZBH)

(no "SAP(SNP)/Variant" information available for 3ZBH)

(no "PROSITE Motif" information available for 3ZBH)

(no "Exon" information available for 3ZBH)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:90
 aligned with A4IKE4_GEOTN | A4IKE4 from UniProtKB/TrEMBL  Length:97

    Alignment length:90
                                    16        26        36        46        56        66        76        86        96
          A4IKE4_GEOTN    7 LTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIASQIR 96
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  3zbh A  7 LTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIASQIR 96
                                    16        26        36        46        56        66        76        86        96

Chain B from PDB  Type:PROTEIN  Length:92
 aligned with A4IKE4_GEOTN | A4IKE4 from UniProtKB/TrEMBL  Length:97

    Alignment length:92
                                    13        23        33        43        53        63        73        83        93  
          A4IKE4_GEOTN    4 VIRLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIASQI 95
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  3zbh B  4 VIRLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIASQI 95
                                    13        23        33        43        53        63        73        83        93

Chain C from PDB  Type:PROTEIN  Length:90
 aligned with A4IKE4_GEOTN | A4IKE4 from UniProtKB/TrEMBL  Length:97

    Alignment length:90
                                    17        27        37        47        57        67        77        87        97
          A4IKE4_GEOTN    8 TPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIASQIRG 97
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  3zbh C  8 TPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIASQIRG 97
                                    17        27        37        47        57        67        77        87        97

Chain D from PDB  Type:PROTEIN  Length:93
 aligned with A4IKE4_GEOTN | A4IKE4 from UniProtKB/TrEMBL  Length:97

    Alignment length:93
                                    13        23        33        43        53        63        73        83        93   
          A4IKE4_GEOTN    4 VIRLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIASQIR 96
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                  3zbh D  4 VIRLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIASQIR 96
                                    13        23        33        43        53        63        73        83        93

Chain E from PDB  Type:PROTEIN  Length:91
 aligned with A4IKE4_GEOTN | A4IKE4 from UniProtKB/TrEMBL  Length:97

    Alignment length:91
                                    16        26        36        46        56        66        76        86        96 
          A4IKE4_GEOTN    7 LTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIASQIRG 97
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  3zbh E  7 LTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIASQIRG 97
                                    16        26        36        46        56        66        76        86        96

Chain F from PDB  Type:PROTEIN  Length:93
 aligned with A4IKE4_GEOTN | A4IKE4 from UniProtKB/TrEMBL  Length:97

    Alignment length:93
                                    10        20        30        40        50        60        70        80        90   
          A4IKE4_GEOTN    1 MAGVIRLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIAS 93
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                  3zbh F  1 MAGVIRLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIAS 93
                                    10        20        30        40        50        60        70        80        90

Chain G from PDB  Type:PROTEIN  Length:93
 aligned with A4IKE4_GEOTN | A4IKE4 from UniProtKB/TrEMBL  Length:97

    Alignment length:93
                                    10        20        30        40        50        60        70        80        90   
          A4IKE4_GEOTN    1 MAGVIRLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIAS 93
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                  3zbh G  1 MAGVIRLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIAS 93
                                    10        20        30        40        50        60        70        80        90

Chain H from PDB  Type:PROTEIN  Length:92
 aligned with A4IKE4_GEOTN | A4IKE4 from UniProtKB/TrEMBL  Length:97

    Alignment length:92
                                    15        25        35        45        55        65        75        85        95  
          A4IKE4_GEOTN    6 RLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIASQIRG 97
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  3zbh H  6 RLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIASQIRG 97
                                    15        25        35        45        55        65        75        85        95

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3ZBH)

(no "CATH Domain" information available for 3ZBH)

(no "Pfam Domain" information available for 3ZBH)

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	3zbh
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Description

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Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

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