3WZ0 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   ON ARCHAEAL HOMOLOGS OF THE HUMAN RNASE P PROTEINS POP5 AND RPP30 IN THE HYPERTHERMOPHILIC ARCHAEON THERMOCOCCUS KODAKARENSIS

Authors :   K. Suematsu, T. Ueda, T. Nakashima, Y. Kakuta, M. Kimura

Date :   11 Sep 14 (Deposition) - 16 Sep 15 (Release) - 16 Sep 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.79

Chains :   Asym./Biol. Unit : A,C,E,F

Keywords :   Tim Barrel-Like Structure, Rrm-Like Structure, Pre-Trna Cleavage, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Suematsu, T. Ueda, T. Nakashima, Y. Kakuta, M. Kimura
On Archaeal Homologs Of The Human Rnase P Proteins Pop5 And Rpp30 In The Hyperthermophilic Archaeon Thermococcus Kodakarensis.
Biosci. Biotechnol. Biochem. V. 79 952 2015
PubMed-ID: 25704799 | Reference-DOI: 10.1080/09168451.2014.1003130

Molecule 1 - RIBONUCLEASE P PROTEIN COMPONENT 3
	Chains	:	E, F
	EC Number	:	3.1.26.5
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	RNP3, TK1450
	Organism Scientific	:	THERMOCOCCUS KODAKARENSIS KOD1
	Organism Taxid	:	69014
	Synonym	:	RNASE P COMPONENT 3, RPP30

Molecule 2 - RIBONUCLEASE P PROTEIN COMPONENT 2
	Chains	:	C, A
	EC Number	:	3.1.26.5
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	RNP2, TK1767
	Organism Scientific	:	THERMOCOCCUS KODAKARENSIS KOD1
	Organism Taxid	:	69014
	Synonym	:	RNASE P COMPONENT 2, POP5

		1	2	3	4
Asymmetric/Biological Unit	:	A	C	E	F

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3WZ0)

(no "Site" information available for 3WZ0)

(no "SS Bond" information available for 3WZ0)

Asymmetric/Biological Unit

No.	Residues
1	Tyr C:117	-	Gly C:118
2	Gly A:118	-	Trp A:119

(no "SAP(SNP)/Variant" information available for 3WZ0)

(no "PROSITE Motif" information available for 3WZ0)

(no "Exon" information available for 3WZ0)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:104
                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee....eeeeeehhhhhhhhhhhhhh........eeeeeeeee.hhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 3wz0 A  16 NRYIAFQVIGERPFKKDEIKKAVWEASLSALGYLGSARAKPWFIKFDEKSQTGIVRVDRKHVEELRFALTMLTEINGSKVIFRTLGVSGTIKRLKRKFLAEYGW 119
                                    25        35        45        55        65        75        85        95       105       115

Chain C from PDB  Type:PROTEIN  Length:105
                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee....eeeeeee..hhhhhhhhhhh..ee..eeeeeeeeeee.hhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 3wz0 C  15 KNRYIAFQVIGERPFKKDEIKKAVWEASLSALGYLGSARAKPWFIKFDEKSQTGIVRVDRKHVEELRFALTMLTEINGSKVIFRTLGVSGTIKRLKRKFLAEYGW 119
                                    24        34        44        54        64        74        84        94       104       114

Chain E from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.hhhhhhhhhhhh.eeeeeeeeee....hhhhhhhhhhhhhhhhh.eeeeeee.hhhhhhhhhhhh...eeeee..hhhhhhhhhhh...eee...........hhhhhhhhhhhh.eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee....hhhhh.hhhhhhhhhhhhh.hhhhhhhh.hhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wz0 E  12 YFVEMDVRDEEAHELASDWFDEVVFTKKLVLEDPPDWGSLKEELKELRGKYGKVALLLVTRKPSLIREVKSRNLKALLYVQGGDMRINRMAIESGVDALISPWFGRKDPGFDHTLAGMAARRGVAIGFSLSPLLNANPYGRAQILRFMMKTWQLVKKYRVPRFITSSAESRWEVRGPRDLMSLGINIGMEIPEARASLNFYPRTIV 217
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211

Chain F from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.hhhhhhhhhhhh.eeeeeeeeee....hhhhhhhhhhhhhhhhh.eeeeeee.hhhhhhhhhhhh...eeeee...hhhhhhhhhh...eee...........hhhhhhhhhhhh.eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee....hhhhh.hhhhhhhhhhhhh.hhhhhhhh.hhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wz0 F  12 YFVEMDVRDEEAHELASDWFDEVVFTKKLVLEDPPDWGSLKEELKELRGKYGKVALLLVTRKPSLIREVKSRNLKALLYVQGGDMRINRMAIESGVDALISPWFGRKDPGFDHTLAGMAARRGVAIGFSLSPLLNANPYGRAQILRFMMKTWQLVKKYRVPRFITSSAESRWEVRGPRDLMSLGINIGMEIPEARASLNFYPRTIV 217
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3WZ0)

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Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Gly A:118 - Trp A:119	[ RasMol ]
		Tyr C:117 - Gly C:118	[ RasMol ]

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	RNP3_THEKO \| Q5JH47
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	RNP3_THEKO \| Q5JH47	:	3wyz

Description

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Ligands, Modified Residues, Ions (0, 0)

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Cis Peptide Bonds (2, 2)

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