3WYR - JenaLib

Title :   CRYSTAL STRUCTURE OF KILLER CELL IMMUNOGLOBULIN-LIKE RECEPTOR 2DL4

Authors :   J. P. Vivian, S. Moradi, J. Rossjohn

Date :   07 Sep 14 (Deposition) - 18 Mar 15 (Release) - 18 Mar 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)

Keywords :   Immunoglobulin Domains, Immune Receptor, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Moradi, R. Berry, P. Pymm, C. Hitchen, S. A. Beckham, M. C. J. Wilce, N. G. Walpole, C. S. Clements, H. H. Reid, M. A. Perugini, A. G. Brooks, J. Rossjohn, J. P. Vivian
The Structure Of The Atypical Killer Cell Immunoglobulin-Like Receptor, Kir2Dl4
J. Biol. Chem. 2015
PubMed: search | Reference-DOI: 10.1074/JBC.M114.612291

Compounds

Molecule 1 - KILLER CELL IMMUNOGLOBULIN-LIKE RECEPTOR 2DL4
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Cell Line	:	HEK 293S
	Expression System Common	:	HUMAN
	Expression System Plasmid	:	PHLSEC
	Expression System Taxid	:	9606
	Expression System Vector Type	:	PLASMID
	Fragment	:	EXTRACELLULAR DOMAIN, UNP RESIDUES 24-218
	Gene	:	KIR2DL4, CD158D, KIR103AS
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	CD158 ANTIGEN-LIKE FAMILY MEMBER D, G9P, KILLER CELL INHIBITORY RECEPTOR 103AS, KIR-103AS, MHC CLASS I NK CELL RECEPTOR KIR103AS

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (1, 2)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:118	BINDING SITE FOR RESIDUE NAG A 201
2	AC2	SOFTWARE	PRO A:109 , GLY B:116 , GLU B:117 , ASN B:118	BINDING SITE FOR RESIDUE NAG B 201

SS Bonds (4, 4)

Cis Peptide Bonds (7, 7)

Asymmetric Unit

No.	Residues
1	Trp A:13	-	Pro A:14
2	Ser A:62	-	Pro A:63
3	Arg A:108	-	Pro A:109
4	Ile A:151	-	Asn A:152
5	Trp B:13	-	Pro B:14
6	Ser B:62	-	Pro B:63
7	Arg B:108	-	Pro B:109

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...eee....eeeeee....eeeeeeee.....hhhhh.eeee.eeee...hhhhheeeeeeee..............eeeeee......eeeee...ee....eeeeeeee.....eeeeee..eeeeeeee.eee...eeeeeeeeee....eeeeeeee..............eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wyr A   7 KPFCSAWPSAVVPQGGHVTLRCHYRRGFNIFTLYKKDGVPVPELYNRIFWNSFLISPVTPAHAGTYRCRGFHPHSPTEWSAPSNPLVIMVTGLYEKPSLTARPGPTVRTGENVTLSCSSQSSFDIYHLSREGEAHELRLPAVPSINGTFQADFPLGPATHGETYRCFGSFHGSPYEWSDASDPLPVSVT 195
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186

Chain B from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...eee....eeeeee....eeeeeeee.....hhhhh..eee.eeee...hhhhheeeeeeee.......eeee...eeeeee......eeeee...ee....eeeeeeee.....eeeeee......eeee.ee.....eeeeeeeee....eeeeeeee..............eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wyr B   7 KPFCSAWPSAVVPQGGHVTLRCHYRRGFNIFTLYKKDGVPVPELYNRIFWNSFLISPVTPAHAGTYRCRGFHPHSPTEWSAPSNPLVIMVTGLYEKPSLTARPGPTVRTGENVTLSCSSQSSFDIYHLSREGEAHELRLPAVPSINGTFQADFPLGPATHGETYRCFGSFHGSPYEWSDASDPLPVSVT 195
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (9, 9)

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	Sites
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		AC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Arg A:108 - Pro A:109	[ RasMol ]
		Arg B:108 - Pro B:109	[ RasMol ]
		Ile A:151 - Asn A:152	[ RasMol ]
		Ser A:62 - Pro A:63	[ RasMol ]
		Ser B:62 - Pro B:63	[ RasMol ]
		Trp A:13 - Pro A:14	[ RasMol ]
		Trp B:13 - Pro B:14	[ RasMol ]

Biological Unit
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		Biological Unit 1	[ Jena3D ]

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