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(-) Description

Title :  STRUCTURE OF HYPERTHERMOPHILIC FAMILY 12 ENDOCELLULASE (E197A) FROM PYROCOCCUS FURIOSUS IN COMPLEX WITH CELLOBIOSE
 
Authors :  M. Kataoka, K. Ishikawa
Date :  04 Aug 14  (Deposition) - 18 Nov 15  (Release) - 18 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.42
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta-Jelly Roll, Glycoside Hydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Kataoka, K. Ishikawa
Structure Of Hyperthermophilic Family 12 Endocellulase Mutant (E197A) From Pyrococcus Furiosus In Complex With Cellobiose
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ENDOGLUCANASE A
    Chains: A
    EC Number: 3.2.1.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: EGLA
    Mutation: YES
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 2261

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1BGC4Ligand/IonBETA-D-GLUCOSE
2CA2Ligand/IonCALCIUM ION
3NHE3Ligand/Ion2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:68 , ASP A:70 , ASP A:72 , ASN A:74 , GLU A:76 , ASP A:142BINDING SITE FOR RESIDUE CA A 401
2AC2SOFTWAREASN A:132 , LYS A:133 , ASN A:136 , ALA A:137 , ASN A:138 , HOH A:519BINDING SITE FOR RESIDUE CA A 402
3AC3SOFTWARETYR A:97 , GLY A:102 , ILE A:128 , THR A:306 , ASN A:307 , ILE A:308 , HOH A:571 , HOH A:614 , HOH A:717 , HOH A:883BINDING SITE FOR RESIDUE NHE A 403
4AC4SOFTWARETHR A:141 , PRO A:148 , SER A:149 , LYS A:150 , ASN A:153 , TRP A:186 , TYR A:281 , HOH A:591 , HOH A:669 , HOH A:702BINDING SITE FOR RESIDUE NHE A 404
5AC5SOFTWARELYS A:213 , ASN A:307 , THR A:309 , THR A:311 , HOH A:674 , HOH A:692 , HOH A:727 , HOH A:814BINDING SITE FOR RESIDUE NHE A 405
6AC6SOFTWAREASN A:82 , LYS A:133 , TRP A:135 , TRP A:180 , HOH A:515 , HOH A:593 , HOH A:656 , HOH A:723 , HOH A:734 , HOH A:751 , HOH A:764 , HOH A:789 , HOH A:836 , HOH A:887BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 406 TO 407
7AC7SOFTWAREGLN A:109 , ASN A:120 , TRP A:121 , MET A:199 , TRP A:201 , LEU A:207 , GLN A:208 , ALA A:210 , TYR A:243 , GLU A:290 , HOH A:570 , HOH A:623 , HOH A:625 , HOH A:681 , HOH A:791 , HOH A:838 , HOH A:860 , HOH A:888BINDING SITE FOR DI-SACCHARIDE BGC A 408 AND BGC A 409

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WXP)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Tyr A:56 -Pro A:57
2Leu A:147 -Pro A:148

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WXP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WXP)

(-) Exons   (0, 0)

(no "Exon" information available for 3WXP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.......eeee.........eeee.....eeeeeeeeeeeee.....eeeeeeeeeeee.hhhhh.....eeeeee......ee........ee....eeeeeeeeeeeee.....eeeeeeeeee.............eeeeeeeeee......eeeeeeeeeeee..eeeeeeeeeeeee...eeeeeee.....eeeeeeehhhhhhhhhhhh...hhhh.ee.eeeee..........eeeeeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wxp A  50 KVLKIRYPDDGEWPGAPIDKDGDGNPEFYIEINLWNILNATGFAEMTYNLTSGVLHYVQQLDNIVLRDRSNWVHGYPEIFYGNKPWNANYATDGPIPLPSKVSNLTDFYLTISYKLEPKNGLPINFAIESWLTREAWRTTGINSDEQAVMIWIYYDGLQPAGSKVKEIVVPIIVNGTPVNATFEVWKANIGWEYVAFRIKTPIKEGTVTIPYGAFISVAANISSLPNYTELYLEDVEIGTEFGTPSTTSAHLEWWITNITLTPLDRPLIS 319
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WXP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WXP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WXP)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Leu A:147 - Pro A:148   [ RasMol ]  
    Tyr A:56 - Pro A:57   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9V2T0_9EURY | Q9V2T0: 3vgi 3wq0 3wq1 3wq7 3wr0 3wt3 3wy6

(-) Related Entries Specified in the PDB File

3vgi THE SAME PROTEIN
3wq0 THE SAME PROTEIN COMPLEXED WITH CELLO-OLIGOSACCHARIDE
3wq1 THE SAME PROTEIN COMPLEXED WITH GLUCO-OLIGOSACCHARIDE C
3wq7 NEW CRYSTAL FORM OF THE SAME PROTEIN
3wxd THE SAME PROTEIN COMPLEXED WITH GLUCO-OLIGOSACCHARIDE B
3wxh THE EGPF MUTANT (E290A) COMPLEXED WITH CELLOBIOSE
3wxn THE SAME PROTEIN COMPLEXED WITH GLUCO-OLIGOSACCHARIDE A