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(-) Description

Title :  PURIFICATION, CHARACTERIZATION AND STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE FROM DROSOPHILA S2 CELLS
 
Authors :  L. Qian
Date :  25 Jul 14  (Deposition) - 10 Jun 15  (Release) - 10 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (2x)
Keywords :  Nucleotide Binding Specificity, Nuclease Activity, Rossmann Fold, Catalyzation, Ndp Binding, Phosphorylation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Qian, X. Liu
Purification, Characterization And Structure Of Nucleoside Diphosphate Kinase From Drosophila Melanogaster
Protein Expr. Purif. V. 103 48 2014
PubMed-ID: 25195176  |  Reference-DOI: 10.1016/J.PEP.2014.08.014

(-) Compounds

Molecule 1 - NUCLEOSIDE DIPHOSPHATE KINASE
    Chains: A, B, C
    EC Number: 2.7.4.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: AWD, K-PN, CG2210
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Synonym: NDK, NDP KINASE, ABNORMAL WING DISKS PROTEIN, KILLER OF PRUNE PROTEIN

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3WX8)

(-) Sites  (0, 0)

(no "Site" information available for 3WX8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WX8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3WX8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WX8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WX8)

(-) Exons   (0, 0)

(no "Exon" information available for 3WX8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhh.eeeeeehhhhhhh.hhhhhhhhhhhhh.eeeee.....hhhhhhhhhhhhh...hhhhhhhhhh....eeeeee..hhhhhhhhhhh..hhhhh...hhhhhhh.hhhhh.eee..hhhhhhhhhhhhhhhhhh......hhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wx8 A   1 MAANKERTFIMVKPDGVQRGLVGKIIERFEQKGFRLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSKPGTIRGDFCIQVGRNIIHGSDAVKSAEKEIALWFNEKELVTWTPAAKDWIYE 153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   


Chain B from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhh.eeeeeehhhhhhh.hhhhhhhhhhhhh.eeeee.....hhhhhhhhhhhhh...hhhhhhhhhh....eeeeee..hhhhhhhhhhh..........hhhhhhh.hhhhh.eee..hhhhhhhhhhhhhhhhhh......hhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wx8 B   1 MAANKERTFIMVKPDGVQRGLVGKIIERFEQKGFRLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSKPGTIRGDFCIQVGRNIIHGSDAVKSAEKEIALWFNEKELVTWTPAAKDWIYE 153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   


Chain C from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhh.eeeeeehhhhhhh.hhhhhhhhhhhhh.eeeee.....hhhhhhhhhhhhh...hhhhhhhhhh....eeeeee..hhhhhhhhhhh..hhhhh...hhhhhhh.hhhhh.eee..hhhhhhhhhhhhhhhhhh......hhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wx8 C   2 AANKERTFIMVKPDGVQRGLVGKIIERFEQKGFRLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSKPGTIRGDFCIQVGRNIIHGSDAVKSAEKEIALWFNEKELVTWTPAAKDWIYE 153
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WX8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WX8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WX8)

(-) Gene Ontology  (33, 33)

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  3wx8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NDKA_DROME | P08879: 1ndl 1nsq

(-) Related Entries Specified in the PDB File

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