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(-) Description

Title :  THE COMPLEX OF POPH_S172C WITH DMSO
 
Authors :  Y. Yang, T. P. Ko, J. H. Li, L. Liu, C. H. Huang, J. Chen, R. T. Guo, G. C. Du
Date :  17 Jun 14  (Deposition) - 29 Apr 15  (Release) - 29 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Tryptophan, Disulfide Bridge, P-Nitrophenyl Esters, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Yang, T. P. Ko, L. Liu, J. Li, C. H. Huang, J. Chen, R. T. Guo, G. Du
Roles Of Tryptophan Residue And Disulfide Bond In The Variable Lid Region Of Oxidized Polyvinyl Alcohol Hydrolase
Biochem. Biophys. Res. Commun. V. 452 509 2014
PubMed-ID: 25173935  |  Reference-DOI: 10.1016/J.BBRC.2014.08.106

(-) Compounds

Molecule 1 - OXIDIZED POLYVINYL ALCOHOL HYDROLASE
    Chains: A
    EC Number: 3.7.1.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET32A
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 30-379
    Gene: PVAB
    Mutation: YES
    Organism Scientific: PSEUDOMONAS SP. VM15C
    Organism Taxid: 237605
    Synonym: OPH, OXIDIZED PVA HYDROLASE, BETA-DIKETONE HYDROLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1CIT1Ligand/IonCITRIC ACID
2DMS1Ligand/IonDIMETHYL SULFOXIDE
3OCS1Mod. Amino AcidCYSTEINESULFONIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:110 , ASN A:304 , THR A:305 , GLN A:306 , GLU A:307 , ARG A:310 , HOH A:555 , HOH A:668 , HOH A:682 , HOH A:937BINDING SITE FOR RESIDUE CIT A 401
2AC2SOFTWARETRP A:121 , OCS A:172 , GLU A:198 , TRP A:255 , TYR A:270 , HOH A:526BINDING SITE FOR RESIDUE DMS A 402

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:22 -A:154
2A:99 -A:111
3A:257 -A:267
4A:292 -A:339

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:233 -Pro A:234

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WWD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WWD)

(-) Exons   (0, 0)

(no "Exon" information available for 3WWD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:336
                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eeeeeeee..eeeeeeee........eeeeeee.....hhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhh.............................hhhhhhhhh..hhhhhhhhhhhhhhh....eeeeeeeeeeehhhhhhhhhhhhhh.....eeeee..............hhhhhhhhhhhh....................eeeeeee.....eeeee.....eeeeeehhhhhhhhhhhhhhh..eeeeeee..........hhhhhhhhhhhhhhh.....hhhhh.........eeee............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wwd A  18 VKWECPAGYEVKEGLNVDFPHKGMKRAFIVYPAKNVSGPAPVWVPMTGSVESTNDNLTVARSGANSILADHGYTVIAPVRACANQDPNIRGERCNGPGSNGWNWNPWFEGRAADPSGEHWKNDEGPDSSFFVAMVQCVGTKYKLDARRLFLGGIcSGGTMTNRALLFRSNFWAGGLPISGEWYVTSDDGTPLSFDDARAAVAAAPTKIHQGRVGPYPLPAKVGPLIVMTVWGGEKDLWNCTRPDGSRFLCADYRPSTQAGSNFFSAQPDVVHVACSSTHGHMWPQLNTQEFNRWALDTLASHPKGSDPRSFKLTQPPEGYTCHVGPFTGLYASAWS 353
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167    |  177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347      
                                                                                                                                                                                    172-OCS
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WWD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WWD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WWD)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OPH_PSESP | Q9LCQ7: 3wl5 3wl6 3wl7 3wl8 3wwc 3wwe

(-) Related Entries Specified in the PDB File

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