3WUP - JenaLib

Title :   CRYSTAL STRUCTURE OF THE UBIQUITIN-BINDING ZINC FINGER (UBZ) DOMAIN OF THE HUMAN DNA POLYMERASE ETA

Authors :   N. Suzuki, S. Wakatsuki, S. Kawasaki

Date :   01 May 14 (Deposition) - 17 Jun 15 (Release) - 01 Jun 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (3x)

Keywords :   Ubiquitin-Binding Zinc Finger, Zinc Finger, Ubiquitin And Ubiquitin- Binding Domain, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Suzuki, A. Rohaim, R. Kato, I. Dikic, S. Wakatsuki, M. Kawasaki
A Novel Mode Of Ubiquitin Recognition By The Ubiquitin-Binding Zinc Finger Domain Of Wrnip1.
Febs J. 2016
PubMed-ID: 27062441 | Reference-DOI: 10.1111/FEBS.13734

Compounds

Molecule 1 - DNA POLYMERASE ETA
	Chains	:	A
	EC Number	:	2.7.7.7
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEX4T1
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UBIQUITIN-BINDING ZINC FINGER, UNP RESIDUES 630-665
	Gene	:	POLH, RAD30, RAD30A, XPV
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	RAD30 HOMOLOG A, XERODERMA PIGMENTOSUM VARIANT TYPE PROTEIN

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	GOL	1	Ligand/Ion	GLYCEROL
3	NA	1	Ligand/Ion	SODIUM ION
4	ZN	1	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	1	Ligand/Ion	GLYCEROL
3	NA	-1	Ligand/Ion	SODIUM ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 3)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	3	Ligand/Ion	GLYCEROL
3	NA	-1	Ligand/Ion	SODIUM ION
4	ZN	-1	Ligand/Ion	ZINC ION

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:635 , CYS A:638 , HIS A:650 , HIS A:654	BINDING SITE FOR RESIDUE ZN A 701
2	AC2	SOFTWARE	TYR A:653	BINDING SITE FOR RESIDUE CL A 702
3	AC3	SOFTWARE	SER A:640 , HOH A:812	BINDING SITE FOR RESIDUE NA A 703
4	AC4	SOFTWARE	PRO A:648 , ASP A:652 , PHE A:655	BINDING SITE FOR RESIDUE GOL A 704

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

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Chain A from PDB  Type:PROTEIN  Length:31
                                                               
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author ..eee......eee..hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                 3wup A 630 EDQVPCEKCGSLVPVWDMPEHMDYHFALELQ 660
                                   639       649       659

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (22, 22)

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