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(-) Description

Title :  MINUTE VIRUS OF MICE NON-STRUCTURAL PROTEIN-1N-TERMINAL NUCLEASE DOMAIN REVEALS A UNIQUE ZN2+ COORDINATION IN THE ACTIVE SITE POCKET AND SHOWS A NOVEL MODE OF DNA RECOGNITION AT THE ORIGIN OF REPLICATION
 
Authors :  S. K. Tewary, H. Zhao, L. Tang
Date :  27 Feb 14  (Deposition) - 21 Jan 15  (Release) - 21 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.58
Chains :  Asym./Biol. Unit :  A
Keywords :  Nuclease Activity, Single And Double Stranded Dna Binding And Nicking Protein, Replication (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. K. Tewary, L. Liang, Z. Lin, A. Lynn, S. F. Cotmore, P. Tattersall, H. Zhao, L. Tang
Structures Of Minute Virus Of Mice Replication Initiator Protein N-Terminal Domain: Insights Into Dna Nicking And Origin Binding.
Virology V. 476C 61 2014
PubMed-ID: 25528417  |  Reference-DOI: 10.1016/J.VIROL.2014.11.022

(-) Compounds

Molecule 1 - NON-CAPSID PROTEIN NS-1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21DE3(834)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-255
    Gene: NS1
    Organism Common: MVM
    Organism Scientific: MURINE MINUTE VIRUS
    Organism Taxid: 648235
    Strain: MVM PROTOTYPE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CO1Ligand/IonCOBALT (II) ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:119 , HIS A:127 , HIS A:129 , HOH A:404 , HOH A:423 , HOH A:529BINDING SITE FOR RESIDUE CO A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WRS)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:220 -Pro A:221

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3WRS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...eeeeeeee...eee..eee..........hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeeeee...eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh..eee...............eehhhhhhhhhhhh...........eeeeeee........hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wrs A   6 YSDEVLGATNWLKEKSNQEVFSFVFKNENVQLNGKDIGWNSYKKELQEDELKSLQRGAETTWDQSEDMEWETTVDEMTKKQVFIFDSLVKKCLFEVLNTKNIFPGDVNWFVQHEWGKDQGWHCHVLIGGKDFSQAQGKWWRRQLNVYWSRWLVTACNVQLTPAERIKLREIAEDNEWVTLLTYKHKQTKKDYTKCVLFGNMIAYYFLTKKKISTSPPRDGGYFLSSDSGWKTNFLKEGERHLVSKLYT 253
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WRS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WRS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WRS)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NS1_MUMIP | P03134: 3wrn 3wro 3wrq 3wrr 4pp4 4r94

(-) Related Entries Specified in the PDB File

3wrn
3wro
3wrq
3wrr
4pp4 THE SAME PROTEIN COMPLEXED WITH ZINC METAL