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(-) Description

Title :  CRYSTAL STRUCTURE OF OSTRINIA FURNACALIS GROUP I CHITINASE CATALYTIC DOMAIN IN COMPLEX WITH A(GLCN)5
 
Authors :  L. Chen, Y. Zhou, Q. Yang
Date :  03 Feb 14  (Deposition) - 28 May 14  (Release) - 28 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.04
Chains :  Asym./Biol. Unit :  A
Keywords :  Family-18 Chitinases, Inhibition, Deacetylated Chitooligosaccharides, , Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Chen, Y. Zhou, M. Qu, Y. Zhao, Q. Yang
Fully Deacetylated Chitooligosaccharides Act As Efficient Glycoside Hydrolase Family18 Chitinase Inhibitors.
J. Biol. Chem. 2014
PubMed-ID: 24828498  |  Reference-DOI: 10.1074/JBC.M114.564534

(-) Compounds

Molecule 1 - CHITINASE
    Chains: A
    EC Number: 3.2.1.14
    Engineered: YES
    Expression System: KOMAGATAELLA PASTORIS
    Expression System Plasmid: PPIC9
    Expression System Strain: GS115
    Expression System Taxid: 644223
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 19-407
    Gene: OFCHTI(OFCHT5)
    Organism Common: ASIAN CORN BORER
    Organism Scientific: OSTRINIA FURNACALIS
    Organism Taxid: 93504

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2GCS5Ligand/IonD-GLUCOSAMINE
3NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:107 , TYR A:149 , ASP A:218 , TRP A:223 , GCS A:501 , HOH A:967BINDING SITE FOR RESIDUE EPE A 508
2AC2SOFTWAREILE A:46 , LEU A:78 , LYS A:82 , ASN A:87 , HOH A:622 , HOH A:729 , HOH A:781 , HOH A:878BINDING SITE FOR MONO-SACCHARIDE NAG A 506 BOUND TO ASN A 87
3AC3SOFTWAREGLN A:207 , ASN A:305 , GCS A:505 , HOH A:786BINDING SITE FOR MONO-SACCHARIDE NAG A 507 BOUND TO ASN A 305
4AC4SOFTWARETYR A:37 , PHE A:61 , GLY A:106 , TRP A:107 , ALA A:108 , ASP A:146 , GLU A:148 , ARG A:174 , ILE A:177 , GLN A:207 , GLU A:208 , MET A:215 , TYR A:217 , ASP A:218 , ARG A:274 , TRP A:372 , NAG A:507 , EPE A:508 , HOH A:603 , HOH A:610 , HOH A:709 , HOH A:822 , HOH A:880 , HOH A:904BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 501 TO 505

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:29 -A:54
2A:206 -A:260
3A:316 -A:383

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ser A:60 -Phe A:61
2Glu A:148 -Tyr A:149
3Trp A:372 -Ala A:373

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WQV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WQV)

(-) Exons   (0, 0)

(no "Exon" information available for 3WQV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:383
 aligned with Q2V6H4_OSTFU | Q2V6H4 from UniProtKB/TrEMBL  Length:554

    Alignment length:383
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403   
         Q2V6H4_OSTFU    24 RARVVCYFSNWAVYRPGVGRYGIEDIPVDMCTHIIYSFIGVTEDTQQVLIIDPELDVDKNGFKNFTSLRSKHPGVKFTVAVGGWAEGGSKYSKMVAAKSTRMAFVRSVVDFLNKYNFDGLDLDWEYPGAADRGGSFSDKDKFLYLVQELRRAFIREGKGWELTAAVPLANFRLMEGYHVPELCQELDAIHVMSYDLRGNWAGFADVHSPLYKRPHDQWAYEKLNVNDGLQLWEDKGCPTNKLVVGIPFYGRSFTLSSGNNNYNLGTYINKEAGGGDPAPYTNATGFWAYYEICTEVDTADSKWTKKWDEHGKCPYAYKGTQWVGYEDPRSVEIKMNWIKEKGYLGAMTWAIDMDDFQGLCGEKNILIKLLHKHMSAYTVPPPR 406
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.hhhhhhhhhh.hhhhhhhhhh.eeeeeeeee......ee..hhhhhh..hhhhhhhhhhhh....eeeeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...eeeee.....hhhhh...hhhhhhhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhhhh.eeee......hhhhh..............hhhhh..hhhhhhhhhhhh..hhh.eeeeee.eeeeee..............hhhhh............eeehhhhhhhhh......eeeee....eeeeee..eeee..hhhhhhhhhhhhhhhh..eeeeehhhhh.........hhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wqv A  24 RARVVCYFSNWAVYRPGVGRYGIEDIPVDMCTHIIYSFIGVTEDTQQVLIIDPELDVDKNGFKNFTSLRSKHPGVKFTVAVGGWAEGGSKYSKMVAAKSTRMAFVRSVVDFLNKYNFDGLDLDWEYPGAADRGGSFSDKDKFLYLVQELRRAFIREGKGWELTAAVPLANFRLMEGYHVPELCQELDAIHVMSYDLRGNWAGFADVHSPLYKRPHDQWAYEKLNVNDGLQLWEDKGCPTNKLVVGIPFYGRSFTLSSGNNNYNLGTYINKEAGGGDPAPYTNATGFWAYYEICTEVDTADSKWTKKWDEHGKCPYAYKGTQWVGYEDPRSVEIKMNWIKEKGYLGAMTWAIDMDDFQGLCGEKNILIKLLHKHMSAYTVPPPR 406
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WQV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WQV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WQV)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q2V6H4_OSTFU | Q2V6H4)
molecular function
    GO:0008061    chitin binding    Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
    GO:0004568    chitinase activity    Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0006032    chitin catabolic process    The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
    GO:0006030    chitin metabolic process    The chemical reactions and pathways involving chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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        Q2V6H4_OSTFU | Q2V6H4: 3w4r 3wkz 3wl0 3wl1 3wqw

(-) Related Entries Specified in the PDB File

3wqw