3WP3 - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   XYLANASE 11C FROM TALAROMYCES CELLULOLYTICUS (FORMERLY KNOWN AS ACREMONIUM CELLULOLYTICUS)

Authors :   K. Ishikawa, H. Inoue, M. Kataoka

Date :   09 Jan 14 (Deposition) - 26 Nov 14 (Release) - 26 Nov 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.98

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Beta-Jelly Roll, Glycoside Hydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Kataoka, F. Akita, Y. Maeno, B. Inoue, H. Inoue, K. Ishikawa
Crystal Structure Of Talaromyces Cellulolyticus (Formerly Known As Acremonium Cellulolyticus) Gh Family 11 Xylanase
Appl Biochem Biotechnol. V. 174 1599 2014
PubMed-ID: 25138599 | Reference-DOI: 10.1007/S12010-014-1130-9

Molecule 1 - ENDO-1,4-BETA-XYLANASE
	Chains	:	A, B
	EC Number	:	3.2.1.8
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 28-207
	Gene	:	XYNC
	Mutation	:	YES
	Organism Common	:	FRUITLET CORE ROT FUNGUS
	Organism Scientific	:	TALAROMYCES FUNICULOSUS
	Organism Taxid	:	28572

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3WP3)

(no "Site" information available for 3WP3)

(no "SS Bond" information available for 3WP3)

Asymmetric Unit

No.	Residues
1	Asn A:86	-	Pro A:87
2	Asp A:115	-	Pro A:116
3	Asn B:86	-	Pro B:87
4	Asp B:115	-	Pro B:116

(no "SAP(SNP)/Variant" information available for 3WP3)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GH11_3	PS51761	Glycosyl hydrolases family 11 (GH11) domain profile.	XYNC_TALFU	35-223	2	A:35-223 B:35-223
2	GH11_1	PS00776	Glycosyl hydrolases family 11 (GH11) active site signature 1.	XYNC_TALFU	116-126	2	A:116-126 B:116-126

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GH11_3	PS51761	Glycosyl hydrolases family 11 (GH11) domain profile.	XYNC_TALFU	35-223	1	A:35-223 -
2	GH11_1	PS00776	Glycosyl hydrolases family 11 (GH11) active site signature 1.	XYNC_TALFU	116-126	1	A:116-126 -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GH11_3	PS51761	Glycosyl hydrolases family 11 (GH11) domain profile.	XYNC_TALFU	35-223	1	- B:35-223
2	GH11_1	PS00776	Glycosyl hydrolases family 11 (GH11) active site signature 1.	XYNC_TALFU	116-126	1	- B:116-126

(no "Exon" information available for 3WP3)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:190
 aligned with XYNC_TALFU | Q9HFH0 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:190
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223
           XYNC_TALFU    34 QSITTSQTGTNNGYYYSFWTNGGGEVTYTNGDNGEYSVTWVDCGDFTSGKGWNPANAQTVTYSGEFNPSGNAYLAVYGWTTDPLVEYYILESYGTYNPSSGLTSLGQVTSDGGTYDIYSTQRVNQPSIEGTSTFNQYWSVRTEKRVGGTVTTANHFAAWKALGLEMGTYNYMIVSTEGYESSGSSTITVS 223
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee..eeeeeee....eeeeee....eeeeeee...eeeeeeee......eeeeeeeeee..eeeeeeeeeee...eeeeeeeee.........eeeeeeee..eeeeeeeeeeeee......eeeeeeeeee......eeeehhhhhhhhhhh.....eeeeeeeeeeee...eeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -GH11_3  PDB: A:35-223 UniProt: 35-223                                                                                                                                                         PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------GH11_1     ------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wp3 A  34 QSITTSQTGTNNGYYYSFWTNGGGEVTYTNGDNGEYSVTWVNCGDFTSGKGWNPANAQTVTYSGEFNTSGNAYLAVYGWTTDPLVEYYILESYGTYNPSSGLTLLGQVTSDGGTYDIYSTQRVDQPSIEGTSTFNQYWSVRTEKRVGGTVTTANHFAAWKALGLEMGTYNYMIVSTEGYESSGSSTITVS 223
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223

Chain B from PDB  Type:PROTEIN  Length:190
 aligned with XYNC_TALFU | Q9HFH0 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:190
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223
           XYNC_TALFU    34 QSITTSQTGTNNGYYYSFWTNGGGEVTYTNGDNGEYSVTWVDCGDFTSGKGWNPANAQTVTYSGEFNPSGNAYLAVYGWTTDPLVEYYILESYGTYNPSSGLTSLGQVTSDGGTYDIYSTQRVNQPSIEGTSTFNQYWSVRTEKRVGGTVTTANHFAAWKALGLEMGTYNYMIVSTEGYESSGSSTITVS 223
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee..eeeeeee....eeeeee....eeeeeee...eeeeeeee......eeeeeeeeee..eeeeeeeeeee...eeeeeeeee............eeeee..eeeeeeeeeeeee......eeeeeeeeee......eeeehhhhhhhhhh......eeeeeeeeeeee...eeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -GH11_3  PDB: B:35-223 UniProt: 35-223                                                                                                                                                         PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------GH11_1     ------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wp3 B  34 QSITTSQTGTNNGYYYSFWTNGGGEVTYTNGDNGEYSVTWVNCGDFTSGKGWNPANAQTVTYSGEFNTSGNAYLAVYGWTTDPLVEYYILESYGTYNPSSGLTLLGQVTSDGGTYDIYSTQRVDQPSIEGTSTFNQYWSVRTEKRVGGTVTTANHFAAWKALGLEMGTYNYMIVSTEGYESSGSSTITVS 223
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3WP3)

(no "CATH Domain" information available for 3WP3)

(no "Pfam Domain" information available for 3WP3)

Asymmetric Unit(hide GO term definitions)

Chain A,B (XYNC_TALFU | Q9HFH0)

molecular function
	GO:0031176	endo-1,4-beta-xylanase activity	Catalysis of the endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0000272	polysaccharide catabolic process	The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.
	GO:0045493	xylan catabolic process	The chemical reactions and pathways resulting in the breakdown of xylan, a polymer containing a beta-1,4-linked D-xylose backbone.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 3wp3)

	Sites
(no "Sites" information available for 3wp3)

	Cis Peptide Bonds
		Asn A:86 - Pro A:87	[ RasMol ]
		Asn B:86 - Pro B:87	[ RasMol ]
		Asp A:115 - Pro A:116	[ RasMol ]
		Asp B:115 - Pro B:116	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	XYNC_TALFU \| Q9HFH0
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	XYNC_TALFU \| Q9HFH0	:	1te1

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Description

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Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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