3WO9 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE LAMPREY VARIABLE LYMPHOCYTE RECEPTOR C

Authors :   R. Kanda, Y. Sutoh, J. Kasamatsu, K. Maenaka, M. Kasahara, T. Ose

Date :   20 Dec 13 (Deposition) - 05 Mar 14 (Release) - 05 Mar 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym./Biol. Unit : A

Keywords :   Leucine Rich Repeat, Immunological Receptor, Membrane, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Kanda, Y. Sutoh, J. Kasamatsu, K. Maenaka, M. Kasahara, T. Ose
Crystal Structure Of The Lamprey Variable Lymphocyte Receptor C Reveals An Unusual Feature In Its N-Terminal Capping Module.
Plos One V. 9 85875 2014
PubMed-ID: 24465760 | Reference-DOI: 10.1371/JOURNAL.PONE.0085875

Molecule 1 - VARIABLE LYMPHOCYTE RECEPTOR C
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-26(B)
	Expression System Strain	:	C43(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	VLRC ECTODOMAIN, UNP RESIDUES 25-246
	Gene	:	VLRC
	Organism Common	:	JAPANESE LAMPREY
	Organism Scientific	:	LETHENTERON CAMTSCHATICUM
	Organism Taxid	:	980415

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3WO9)

(no "Site" information available for 3WO9)

Asymmetric/Biological Unit

No.	Residues
1	A:28	-	A:39
2	A:37	-	A:52
3	A:200	-	A:227
4	A:202	-	A:247

(no "Cis Peptide Bond" information available for 3WO9)

(no "SAP(SNP)/Variant" information available for 3WO9)

(no "PROSITE Motif" information available for 3WO9)

(no "Exon" information available for 3WO9)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:223
 aligned with E0D2V6_LETCA | E0D2V6 from UniProtKB/TrEMBL  Length:320

    Alignment length:223
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242   
         E0D2V6_LETCA    23 RRACLAVGKDDICTCSNKTDSSPETVDCSSKKLTAVPTGIPANTEKLQLDFNQLANIPAEAFHGLTRLTYLALDYNQLQSLPVGVFDQLNNLNELRLQDNQLTSLPPGVFDSLTKLTYLTLSQNQLQSIPAGVFDKLTNLNRLELSTNQLQSVPHGAFDSLVNLETLHLELNPWDCACSDIIYLRTFIAKNTDKISGMESAQCNGTSTAVKDVNTEKIKNVTC 245
               SCOP domains d3wo9a_ A: automated matches                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..ee...eee........eee..................eee.....................eee.....................eee.....................eee.....................eee.....................eee...........hhhhhhhhhhhhh................hhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wo9 A  25 HMACLAVGKDDICTCSNKTDSSPETVDCSSKKLTAVPTGIPANTEKLQLDFNQLANIPAEAFHGLTRLTYLALDYNQLQSLPVGVFDQLNNLNELRLQDNQLTSLPPGVFDSLTKLTYLTLSQNQLQSIPAGVFDKLTNLNRLELSTNQLQSVPHGAFDSLVNLETLHLELNPWDCACSDIIYLRTFIAKNTDKISGMESAQCNGTSTAVKDVNTEKIKNVTC 247
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

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Class: Alpha and beta proteins (a/b) (23833)

Fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) (112)

Superfamily: L domain-like (93)

Family: automated matches (23)

Protein domain: automated matches (23)

Lethenteron camtschaticum [TaxId: 980415] (1)

d3wo9a_

(no "CATH Domain" information available for 3WO9)

(no "Pfam Domain" information available for 3WO9)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (E0D2V6_LETCA | E0D2V6)

cellular component
	GO:0016021		integral component of membrane		The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020		membrane		A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Asymmetric/Biological Unit
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Description

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Ligands, Modified Residues, Ions (0, 0)

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SS Bonds (4, 4)

Cis Peptide Bonds (0, 0)

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