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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN SLL-2 AND GALNAC.
 
Authors :  A. Kita, M. Jimbo, R. Sakai, Y. Morimoto, K. Miki
Date :  22 Nov 13  (Deposition) - 14 Jan 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (6x)
Keywords :  Six-Stranded Antiparallel-Beta Sandwich, Galactose Binding Protein, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Kita, M. Jimbo, R. Sakai, Y. Morimoto, K. Miki
Crystal Structure Of A Symbiosis-Related Lectin From Octocoral.
Glycobiology V. 25 1016 2015
PubMed-ID: 26022515  |  Reference-DOI: 10.1093/GLYCOB/CWV033

(-) Compounds

Molecule 1 - GALACTOSE-BINDING LECTIN
    Chains: A
    Fragment: UNP RESIDUES 47-140
    Organism Scientific: SINULARIA LOCHMODES
    Organism Taxid: 301888

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (6x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 10)

Asymmetric Unit (5, 10)
No.NameCountTypeFull Name
1A2G1Ligand/IonN-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2CL4Ligand/IonCHLORIDE ION
3MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4NA1Ligand/IonSODIUM ION
5NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (3, 30)
No.NameCountTypeFull Name
1A2G6Ligand/IonN-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2CL-1Ligand/IonCHLORIDE ION
3MPD12Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4NA-1Ligand/IonSODIUM ION
5NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:18 , ASP A:50 , ASN A:56 , ARG A:58 , TRP A:78 , TYR A:79 , TRP A:84 , MPD A:1004 , MPD A:1005 , CL A:1009 , HOH A:1111 , HOH A:1157 , HOH A:1169BINDING SITE FOR RESIDUE A2G A 1003
2AC2SOFTWAREARG A:58 , TYR A:79 , A2G A:1003 , MPD A:1005 , HOH A:1146 , HOH A:1162 , HOH A:1172 , HOH A:1173BINDING SITE FOR RESIDUE MPD A 1004
3AC3SOFTWARETYR A:79 , A2G A:1003 , MPD A:1004 , CL A:1009 , HOH A:1172BINDING SITE FOR RESIDUE MPD A 1005
4AC4SOFTWAREASN A:55 , ASN A:56 , ARG A:58 , THR A:80BINDING SITE FOR RESIDUE CL A 1006
5AC5SOFTWAREARG A:7 , GLU A:37 , HOH A:1136BINDING SITE FOR RESIDUE CL A 1007
6AC6SOFTWAREARG A:16 , NAG A:1001BINDING SITE FOR RESIDUE CL A 1008
7AC7SOFTWARETRP A:18 , A2G A:1003 , MPD A:1005BINDING SITE FOR RESIDUE CL A 1009
8AC8SOFTWAREHIS A:15 , ASP A:23 , HOH A:1148 , HOH A:1158BINDING SITE FOR RESIDUE NA A 1010
9AC9SOFTWAREARG A:16 , ASN A:60 , SER A:62 , ASP A:64 , HIS A:74 , ASN A:76 , TRP A:78 , CL A:1008 , HOH A:1130 , HOH A:1147BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 60 RESIDUES 1001 TO 1002

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:8 -A:93
2A:17 -A:22

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Trp A:18 -Pro A:19
2Trp A:33 -Pro A:34

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WMQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WMQ)

(-) Exons   (0, 0)

(no "Exon" information available for 3WMQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:94
                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeee........eeeeeee.........eeeeeeeeeee.......eeeeeeeee..eeeeeeee.....eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                  3wmq A  1 RLIHVSRCEMGTSTHRCWPRPCDTSSDEPISFWPPFENTPNVIVSFGMLDVDNSNNLRVNSSADDVTVGGFTLHYNSWYTTTVWNYKLIWIACD 94
                                    10        20        30        40        50        60        70        80        90
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WMQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WMQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WMQ)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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        A4CYJ6_9CNID | A4CYJ6: 3wmp

(-) Related Entries Specified in the PDB File

3wmp