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(-) Description

Title :  CRYSTAL STRUCTURE OF THE L68D VARIANT OF MLOLB
 
Authors :  K. Takeda, H. Tokuda, K. Miki
Date :  16 Oct 13  (Deposition) - 05 Mar 14  (Release) - 30 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  A
Keywords :  Lola/B Fold, Outer Membrane, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Hayashi, R. Tsurumizu, J. Tsukahara, K. Takeda, S. Narita, M. Mori, K. Miki, H. Tokuda
Roles Of The Protruding Loop Of Factor B Essential For The Localization Of Lipoproteins (Lolb) In The Anchoring Of Bacterial Triacylated Proteins To The Outer Membran
J. Biol. Chem. V. 289 10530 2014
PubMed-ID: 24569999  |  Reference-DOI: 10.1074/JBC.M113.539270

(-) Compounds

Molecule 1 - OUTER-MEMBRANE LIPOPROTEIN LOLB
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRT102
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 22-207
    Gene: LOLB, ECDH1ME8569_1148
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 536056
    Strain: ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2SO43Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:34 , ARG A:49BINDING SITE FOR RESIDUE SO4 A 201
2AC2SOFTWARELYS A:11 , SER A:12 , ARG A:61 , GLU A:74 , ARG A:91 , HOH A:388 , HOH A:391BINDING SITE FOR RESIDUE SO4 A 202
3AC3SOFTWAREHIS A:21 , ARG A:135 , PRO A:161 , ALA A:162 , HOH A:387BINDING SITE FOR RESIDUE SO4 A 203
4AC4SOFTWAREARG A:34BINDING SITE FOR RESIDUE CL A 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WJT)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gln A:160 -Pro A:161

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WJT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WJT)

(-) Exons   (0, 0)

(no "Exon" information available for 3WJT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains d3wjta_ A: Outer membrane lipoprotein receptor LolB                                                                                                                                SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhh..eeeeeeeeeeee..eeeeeeeeeeeee..eeeeeee.....eeeeeeee..eeeeee....eeee.hhhhhhhhhh....hhhhhhhhh........eeee.....eeeeeeee..eeeeeee..ee......ee.eeeee...eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wjt A   9 PGKSPDSPQWRQHQQDVRNLNQYQTRGAFAYISDQQKVYARFFWQQTGQDRYRLLLTNPDGSTELELNAQPGNVQLVDNKGQRYTADDAEEMIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEITYSQNGKNWKVVYGGYDTKTQPAMPANMELTDGGQRIKLKMDNWIVK 186
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WJT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WJT)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  3wjt
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 Related Entries

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(-) Related Entries Specified in the PDB File

3wju 3wjv