3W7E - JenaLib

Asymmetric Unit (26, 26)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:43 , ASN A:67 , SER A:68 , MET A:69 , GLY A:70 , LEU A:71 , SER A:99 , LEU A:101 , ASN A:127 , PRO A:131 , ASN A:194 , SER A:195 , GOL A:407 , FMN A:413 , HOH A:511	BINDING SITE FOR RESIDUE W7F A 401
02	AC2	SOFTWARE	ARG A:238 , HOH A:669 , GLN B:215 , GOL B:408	BINDING SITE FOR RESIDUE GOL A 402
03	AC3	SOFTWARE	ASP A:203 , SER A:206 , VAL A:209 , HOH A:573 , HOH A:679 , HOH A:771	BINDING SITE FOR RESIDUE GOL A 403
04	AC4	SOFTWARE	CYS A:31 , ALA A:34 , SER A:35 , HOH A:531 , CYS B:31 , ALA B:34 , SER B:35 , PRO B:279 , HOH B:668	BINDING SITE FOR RESIDUE GOL A 404
05	AC5	SOFTWARE	ILE A:171 , ARG A:239 , HOH A:594 , HOH A:764 , HOH A:791 , LYS B:214 , PHE B:217 , GOL B:408	BINDING SITE FOR RESIDUE GOL A 405
06	AC6	SOFTWARE	TYR A:237 , PRO A:241 , HOH A:568	BINDING SITE FOR RESIDUE GOL A 406
07	AC7	SOFTWARE	SER A:129 , GLN A:138 , PRO A:166 , ASN A:194 , SER A:195 , GLY A:197 , W7F A:401 , HOH A:511 , HOH A:520 , HOH A:529	BINDING SITE FOR RESIDUE GOL A 407
08	AC8	SOFTWARE	LEU A:4 , ASN A:5 , GLU A:302 , ARG A:305 , HOH A:743 , HOH A:809 , ASN B:5 , HOH B:781	BINDING SITE FOR RESIDUE GOL A 408
09	AC9	SOFTWARE	PHE A:61 , ASP A:203 , HOH A:576 , HOH A:663 , HOH A:679	BINDING SITE FOR RESIDUE GOL A 409
10	BC1	SOFTWARE	TYR A:58 , MET A:69 , GLN A:275 , HOH A:539 , HOH A:621	BINDING SITE FOR RESIDUE GOL A 410
11	BC2	SOFTWARE	ARG A:299 , THR A:300 , HOH A:753 , CYS B:1 , LEU B:2 , LYS B:3 , ALA B:12 , HOH B:573 , HOH B:741	BINDING SITE FOR RESIDUE GOL A 411
12	BC3	SOFTWARE	PHE A:61 , GLU A:276 , HOH A:677 , HOH A:800	BINDING SITE FOR RESIDUE GOL A 412
13	BC4	SOFTWARE	ALA A:18 , ALA A:19 , GLY A:20 , LYS A:43 , SER A:44 , ASN A:67 , MET A:69 , ASN A:127 , LYS A:164 , VAL A:193 , ASN A:194 , GLY A:221 , GLY A:222 , ILE A:225 , CYS A:248 , GLY A:249 , GLY A:250 , GLY A:271 , THR A:272 , W7F A:401 , HOH A:508 , HOH A:516 , HOH A:527 , HOH A:765	BINDING SITE FOR RESIDUE FMN A 413
14	BC5	SOFTWARE	GLN A:275 , GLU A:276 , GLY A:278 , HOH A:736 , HOH A:801 , GLN B:275 , GLU B:276 , GLY B:278	BINDING SITE FOR RESIDUE NCO A 414
15	BC6	SOFTWARE	LYS B:43 , ARG B:50 , ASN B:67 , MET B:69 , GLY B:70 , LEU B:71 , SER B:99 , LEU B:101 , ASN B:127 , SER B:129 , PRO B:131 , ASN B:194 , SER B:195 , GOL B:403 , FMN B:412 , HOH B:778	BINDING SITE FOR RESIDUE W7F B 401
16	BC7	SOFTWARE	LYS A:214 , PHE A:217 , HOH A:542 , ILE B:171 , ARG B:239 , HOH B:557	BINDING SITE FOR RESIDUE GOL B 402
17	BC8	SOFTWARE	SER B:129 , GLN B:138 , PRO B:166 , ASN B:194 , SER B:195 , GLY B:197 , W7F B:401 , HOH B:515 , HOH B:778	BINDING SITE FOR RESIDUE GOL B 403
18	BC9	SOFTWARE	TYR B:237 , PRO B:241 , HOH B:539 , HOH B:714	BINDING SITE FOR RESIDUE GOL B 404
19	CC1	SOFTWARE	PHE B:61 , ASP B:203 , HOH B:611 , HOH B:702 , HOH B:704	BINDING SITE FOR RESIDUE GOL B 405
20	CC2	SOFTWARE	ILE A:311 , SER B:206 , SER B:208 , VAL B:209 , VAL B:210 , HOH B:635 , HOH B:702	BINDING SITE FOR RESIDUE GOL B 406
21	CC3	SOFTWARE	VAL B:10 , TYR B:89 , SER B:90 , LYS B:91 , PRO B:93 , GOL B:409 , HOH B:513 , HOH B:751	BINDING SITE FOR RESIDUE GOL B 407
22	CC4	SOFTWARE	ARG A:238 , ARG A:239 , GOL A:402 , GOL A:405 , GLN B:215 , HOH B:567 , HOH B:657	BINDING SITE FOR RESIDUE GOL B 408
23	CC5	SOFTWARE	HIS B:9 , TYR B:89 , LYS B:92 , PRO B:93 , LYS B:120 , GLY B:121 , GOL B:407 , HOH B:511 , HOH B:720 , HOH B:764	BINDING SITE FOR RESIDUE GOL B 409
24	CC6	SOFTWARE	MET B:69 , GLN B:275 , HOH B:578 , HOH B:649 , HOH B:691	BINDING SITE FOR RESIDUE GOL B 410
25	CC7	SOFTWARE	HIS A:173 , TYR B:141 , PHE B:143 , HIS B:173 , HOH B:612 , HOH B:721 , HOH B:821 , HOH B:846	BINDING SITE FOR RESIDUE GOL B 411
26	CC8	SOFTWARE	ALA B:18 , ALA B:19 , GLY B:20 , LYS B:43 , SER B:44 , ASN B:67 , ASN B:127 , LYS B:164 , VAL B:193 , ASN B:194 , GLY B:222 , CYS B:248 , GLY B:249 , GLY B:250 , GLY B:271 , THR B:272 , W7F B:401 , HOH B:506 , HOH B:519 , HOH B:524 , HOH B:776	BINDING SITE FOR RESIDUE FMN B 412

SS Bonds (1, 1)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (8, 16)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:313
 aligned with PYRD_TRYCC | Q4D3W2 from UniProtKB/Swiss-Prot  Length:314

    Alignment length:313
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311   
           PYRD_TRYCC     2 MCLKLNLLDHVFANPFMNAAGVLCSTEEDLRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPNLGFDFYLKYASDLHDYSKKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMARKGYRTLEEFRGRVKTIE 314
               SCOP domains d3w7ea_ A: Dihydroorotate dehydrogenase                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee..eee...eee.......hhhhhhhhhhh....eeeeee............eeee..eeee.......hhhhhhhhhhhh.......eeeee...hhhhhhhhhhhhhhhhhhhh.eeeee..........hhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh...eeeeee...eeeee.ee....ee..hhhh.eeeeehhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhheeeeeehhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhh........ Sec.struct. author
                 SAPs(SNPs) TR-----------------------------------------------------------V----------------------I-----------V---------------------------------------------------------------------------------------------------------------------------I--------------------------------------------------------------R---------------K------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3w7e A   0 MCLKLNLLDHVFANPFMNAAGVLCSTEEDLRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPNLGFDFYLKYASDLHDYSKKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMARKGYRTLEEFRGRVKTIE 312
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309

Chain B from PDB  Type:PROTEIN  Length:313
 aligned with PYRD_TRYCC | Q4D3W2 from UniProtKB/Swiss-Prot  Length:314

    Alignment length:313
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311   
           PYRD_TRYCC     2 MCLKLNLLDHVFANPFMNAAGVLCSTEEDLRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPNLGFDFYLKYASDLHDYSKKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMARKGYRTLEEFRGRVKTIE 314
               SCOP domains d3w7eb_ B: Dihydroorotate dehydrogenase                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee..eee...eee.......hhhhhhhhhhh....ee................eeee..eeee.......hhhhhhhhhhhh.......eeeee...hhhhhhhhhhhhhhhhhhhh.eeeee..........hhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh...eeeeee...eeeee.ee....ee..hhhh.eeeeehhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhheeeeeehhhhhhhh.hhhhhhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) TR-----------------------------------------------------------V----------------------I-----------V---------------------------------------------------------------------------------------------------------------------------I--------------------------------------------------------------R---------------K------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3w7e B   0 MCLKLNLLDHVFANPFMNAAGVLCSTEEDLRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPNLGFDFYLKYASDLHDYSKKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMARKGYRTLEEFRGRVKTIE 312
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (PYRD_TRYCC | Q4D3W2)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:1990663	dihydroorotate dehydrogenase (fumarate) activity	Catalysis of the reaction: (S)-dihydroorotate + fumarate = orotate + succinate.
	GO:0004152	dihydroorotate dehydrogenase activity	Catalysis of the reaction: (S)-dihydroorotate + A = AH(2) + orotate.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
	GO:0044205	'de novo' UMP biosynthetic process	The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate, starting with the synthesis of (S)-dihydroorotate from bicarbonate; UMP biosynthesis may either occur via reduction by quinone, NAD(+) or oxygen.
	GO:0006222	UMP biosynthetic process	The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006221	pyrimidine nucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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	Cis Peptide Bonds
		Cys A:192 - Val A:193	[ RasMol ]
		Cys B:192 - Val B:193	[ RasMol ]
		Glu A:55 - Pro A:56	[ RasMol ]
		Glu B:55 - Pro B:56	[ RasMol ]

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 26)

Sites (26, 26)

SS Bonds (1, 1)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (8, 16)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File