Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  STRUCTURAL INSIGHTS INTO COFACTOR AND SUBSTRATE SELECTION BY GOX0499
 
Authors :  Y. A. Yuan, Z. Yuan, B. Yin, D. Wei
Date :  09 Oct 12  (Deposition) - 10 Jul 13  (Release) - 10 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Gox0499, Substrate Selection, Cofactor Preference, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Z. Yuan, B. Yin, D. Wei, Y. A. Yuan
Structural Basis For Cofactor And Substrate Selection By Cyanobacterium Succinic Semialdehyde Dehydrogenase
J. Struct. Biol. V. 182 125 2013
PubMed-ID: 23500184  |  Reference-DOI: 10.1016/J.JSB.2013.03.001

(-) Compounds

Molecule 1 - PUTATIVE NAD-DEPENDENT ALDEHYDE DEHYDROGENASE
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneGOX0499
    Organism ScientificGLUCONOBACTER OXYDANS
    Organism Taxid290633
    Strain621H
    SynonymREDOX

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 48)

Asymmetric Unit (2, 48)
No.NameCountTypeFull Name
12PE4Ligand/IonNONAETHYLENE GLYCOL
2MSE44Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 24)
No.NameCountTypeFull Name
12PE2Ligand/IonNONAETHYLENE GLYCOL
2MSE22Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 24)
No.NameCountTypeFull Name
12PE2Ligand/IonNONAETHYLENE GLYCOL
2MSE22Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:84 , VAL A:88 , PHE A:134 , TYR A:137 , TRP A:251 , TRP A:254 , THR A:265 , ALA A:420 , ALA A:421 , PHE A:427BINDING SITE FOR RESIDUE 2PE A 501
2AC2SOFTWAREGLU B:84 , PHE B:134 , TYR B:137 , TRP B:251 , TRP B:254 , THR B:265 , ALA B:420 , ALA B:421 , PHE B:427BINDING SITE FOR RESIDUE 2PE B 501
3AC3SOFTWAREPHE C:134 , TYR C:137 , TRP C:251 , TRP C:254 , THR C:265 , ALA C:420 , ALA C:421 , PHE C:427BINDING SITE FOR RESIDUE 2PE C 501
4AC4SOFTWAREVAL D:88 , PHE D:134 , TYR D:137 , TRP D:251 , THR D:265 , ALA D:420 , ALA D:421 , PHE D:427BINDING SITE FOR RESIDUE 2PE D 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3VZ0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3VZ0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3VZ0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3VZ0)

(-) Exons   (0, 0)

(no "Exon" information available for 3VZ0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:456
 aligned with Q5FTL8_GLUOX | Q5FTL8 from UniProtKB/TrEMBL  Length:456

    Alignment length:456
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450      
         Q5FTL8_GLUOX     1 MIVYQTLNPTTETVERSFDLHTPAQMKDITDRAEHVWKTDWKLRSIAQRKEIVSRAADLLRRDRQHHASLIATEMGKALPDALEEIDVTADILSFYANGAEEFLAPTPLKVKTGQAKIINQPLGIIYCIEPWNFPYYQLARVAGPNLMAGNVVIAKHAPNVPQCALAFEKLFHDAGAPVGAYANIFLDNDQSAELIKDERIRGVALTGSERAGQAVAAQAGAALKKDTMELGGSDAFIVLDDADLDLAVKWAVWGRFANNGQVCTAAKRMIVHEKVYDAFLDGLKTAITRFRIGNPLDRDTTHGPMSSLRAMELALDQTAEAVKGGATLVAGGKRMDRKGFFMEPTILTDVSKDNPVFYQEIFGPVAVVHKVASEQAAIDLANDSPYGLGGAVFSRDIARAEKVAEQVETGMVFINTATAAAPELPFGGIKNSGFGRELSFLGIEEFINRKLVRIG 456
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee......eeeee...hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..eee.....eeeeeeee..eeeee......hhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh.....eeee..hhhhhhhhhh...eeeeeee.hhhhhhhhhhhhhhh..eeeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhh..eeee..............eeee................eeeeeee.hhhhhhhhhhh......eeee..hhhhhhhhhhhh...eeee..............hhh.ee...hhhhhh...eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3vz0 A   1 mIVYQTLNPTTETVERSFDLHTPAQmKDITDRAEHVWKTDWKLRSIAQRKEIVSRAADLLRRDRQHHASLIATEmGKALPDALEEIDVTADILSFYANGAEEFLAPTPLKVKTGQAKIINQPLGIIYCIEPWNFPYYQLARVAGPNLmAGNVVIAKHAPNVPQCALAFEKLFHDAGAPVGAYANIFLDNDQSAELIKDERIRGVALTGSERAGQAVAAQAGAALKKDTmELGGSDAFIVLDDADLDLAVKWAVWGRFANNGQVCTAAKRmIVHEKVYDAFLDGLKTAITRFRIGNPLDRDTTHGPmSSLRAmELALDQTAEAVKGGATLVAGGKRmDRKGFFmEPTILTDVSKDNPVFYQEIFGPVAVVHKVASEQAAIDLANDSPYGLGGAVFSRDIARAEKVAEQVETGmVFINTATAAAPELPFGGIKNSGFGRELSFLGIEEFINRKLVRIG 456
                            |       10        20     |  30        40        50        60        70    |   80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300     | 310 |     320       330     | 340  |    350       360       370       380       390       400       410 |     420       430       440       450      
                            |                       26-MSE                                           75-MSE                                                                  148-MSE                                                                          229-MSE                                  270-MSE                             306-MSE |                     336-MSE  |                                                                  412-MSE                                        
                            1-MSE                                                                                                                                                                                                                                                                                                                312-MSE                        343-MSE                                                                                                             

Chain B from PDB  Type:PROTEIN  Length:456
 aligned with Q5FTL8_GLUOX | Q5FTL8 from UniProtKB/TrEMBL  Length:456

    Alignment length:456
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450      
         Q5FTL8_GLUOX     1 MIVYQTLNPTTETVERSFDLHTPAQMKDITDRAEHVWKTDWKLRSIAQRKEIVSRAADLLRRDRQHHASLIATEMGKALPDALEEIDVTADILSFYANGAEEFLAPTPLKVKTGQAKIINQPLGIIYCIEPWNFPYYQLARVAGPNLMAGNVVIAKHAPNVPQCALAFEKLFHDAGAPVGAYANIFLDNDQSAELIKDERIRGVALTGSERAGQAVAAQAGAALKKDTMELGGSDAFIVLDDADLDLAVKWAVWGRFANNGQVCTAAKRMIVHEKVYDAFLDGLKTAITRFRIGNPLDRDTTHGPMSSLRAMELALDQTAEAVKGGATLVAGGKRMDRKGFFMEPTILTDVSKDNPVFYQEIFGPVAVVHKVASEQAAIDLANDSPYGLGGAVFSRDIARAEKVAEQVETGMVFINTATAAAPELPFGGIKNSGFGRELSFLGIEEFINRKLVRIG 456
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee......eeeee...hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..ee......eeeeeeee..eeeeee.....hhhhhhhhhhhhhhh.eeeeee...hhhhhhhhhhhhhhh......eee...hhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhh..eeeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhh..eeee..............eeee................eeeeeee.hhhhhhhhhh...ee..eeee..hhhhhhhhhhhh...eeee..............ee..ee...hhhhhh...eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3vz0 B   1 mIVYQTLNPTTETVERSFDLHTPAQmKDITDRAEHVWKTDWKLRSIAQRKEIVSRAADLLRRDRQHHASLIATEmGKALPDALEEIDVTADILSFYANGAEEFLAPTPLKVKTGQAKIINQPLGIIYCIEPWNFPYYQLARVAGPNLmAGNVVIAKHAPNVPQCALAFEKLFHDAGAPVGAYANIFLDNDQSAELIKDERIRGVALTGSERAGQAVAAQAGAALKKDTmELGGSDAFIVLDDADLDLAVKWAVWGRFANNGQVCTAAKRmIVHEKVYDAFLDGLKTAITRFRIGNPLDRDTTHGPmSSLRAmELALDQTAEAVKGGATLVAGGKRmDRKGFFmEPTILTDVSKDNPVFYQEIFGPVAVVHKVASEQAAIDLANDSPYGLGGAVFSRDIARAEKVAEQVETGmVFINTATAAAPELPFGGIKNSGFGRELSFLGIEEFINRKLVRIG 456
                            |       10        20     |  30        40        50        60        70    |   80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300     | 310 |     320       330     | 340  |    350       360       370       380       390       400       410 |     420       430       440       450      
                            1-MSE                   26-MSE                                           75-MSE                                                                  148-MSE                                                                          229-MSE                                  270-MSE                             306-MSE |                     336-MSE  |                                                                  412-MSE                                        
                                                                                                                                                                                                                                                                                                                                                 312-MSE                        343-MSE                                                                                                             

Chain C from PDB  Type:PROTEIN  Length:456
 aligned with Q5FTL8_GLUOX | Q5FTL8 from UniProtKB/TrEMBL  Length:456

    Alignment length:456
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450      
         Q5FTL8_GLUOX     1 MIVYQTLNPTTETVERSFDLHTPAQMKDITDRAEHVWKTDWKLRSIAQRKEIVSRAADLLRRDRQHHASLIATEMGKALPDALEEIDVTADILSFYANGAEEFLAPTPLKVKTGQAKIINQPLGIIYCIEPWNFPYYQLARVAGPNLMAGNVVIAKHAPNVPQCALAFEKLFHDAGAPVGAYANIFLDNDQSAELIKDERIRGVALTGSERAGQAVAAQAGAALKKDTMELGGSDAFIVLDDADLDLAVKWAVWGRFANNGQVCTAAKRMIVHEKVYDAFLDGLKTAITRFRIGNPLDRDTTHGPMSSLRAMELALDQTAEAVKGGATLVAGGKRMDRKGFFMEPTILTDVSKDNPVFYQEIFGPVAVVHKVASEQAAIDLANDSPYGLGGAVFSRDIARAEKVAEQVETGMVFINTATAAAPELPFGGIKNSGFGRELSFLGIEEFINRKLVRIG 456
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee......eeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee.....eeeeeeee..eeeeee.....hhhhhhhhhhhhhhh.eeeeee...hhhhhhhhhhhhhhhh.....eee...hhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhh..eeeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhh..eeee..............eeee................eeeeeee.hhhhhhhhhhh..ee..eeee..hhhhhhhhhhhh...eeee..............ee..ee...hhhhhh...eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3vz0 C   1 mIVYQTLNPTTETVERSFDLHTPAQmKDITDRAEHVWKTDWKLRSIAQRKEIVSRAADLLRRDRQHHASLIATEmGKALPDALEEIDVTADILSFYANGAEEFLAPTPLKVKTGQAKIINQPLGIIYCIEPWNFPYYQLARVAGPNLmAGNVVIAKHAPNVPQCALAFEKLFHDAGAPVGAYANIFLDNDQSAELIKDERIRGVALTGSERAGQAVAAQAGAALKKDTmELGGSDAFIVLDDADLDLAVKWAVWGRFANNGQVCTAAKRmIVHEKVYDAFLDGLKTAITRFRIGNPLDRDTTHGPmSSLRAmELALDQTAEAVKGGATLVAGGKRmDRKGFFmEPTILTDVSKDNPVFYQEIFGPVAVVHKVASEQAAIDLANDSPYGLGGAVFSRDIARAEKVAEQVETGmVFINTATAAAPELPFGGIKNSGFGRELSFLGIEEFINRKLVRIG 456
                            |       10        20     |  30        40        50        60        70    |   80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300     | 310 |     320       330     | 340  |    350       360       370       380       390       400       410 |     420       430       440       450      
                            1-MSE                   26-MSE                                           75-MSE                                                                  148-MSE                                                                          229-MSE                                  270-MSE                             306-MSE |                     336-MSE  |                                                                  412-MSE                                        
                                                                                                                                                                                                                                                                                                                                                 312-MSE                        343-MSE                                                                                                             

Chain D from PDB  Type:PROTEIN  Length:456
 aligned with Q5FTL8_GLUOX | Q5FTL8 from UniProtKB/TrEMBL  Length:456

    Alignment length:456
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450      
         Q5FTL8_GLUOX     1 MIVYQTLNPTTETVERSFDLHTPAQMKDITDRAEHVWKTDWKLRSIAQRKEIVSRAADLLRRDRQHHASLIATEMGKALPDALEEIDVTADILSFYANGAEEFLAPTPLKVKTGQAKIINQPLGIIYCIEPWNFPYYQLARVAGPNLMAGNVVIAKHAPNVPQCALAFEKLFHDAGAPVGAYANIFLDNDQSAELIKDERIRGVALTGSERAGQAVAAQAGAALKKDTMELGGSDAFIVLDDADLDLAVKWAVWGRFANNGQVCTAAKRMIVHEKVYDAFLDGLKTAITRFRIGNPLDRDTTHGPMSSLRAMELALDQTAEAVKGGATLVAGGKRMDRKGFFMEPTILTDVSKDNPVFYQEIFGPVAVVHKVASEQAAIDLANDSPYGLGGAVFSRDIARAEKVAEQVETGMVFINTATAAAPELPFGGIKNSGFGRELSFLGIEEFINRKLVRIG 456
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee......eeeee...hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..ee......eeeeeeee..eeeeee.....hhhhhhhhhhhhhhh.eeeeee...hhhhhhhhhhhhhhhh.....eee...hhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhh..eeeee....eeeee....hhhhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhh..eeee..............eeee................eeeeeee.hhhhhhhhhh.......eeee..hhhhhhhhhhhh...eeee..............hhh.ee...hhhhhh...eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3vz0 D   1 mIVYQTLNPTTETVERSFDLHTPAQmKDITDRAEHVWKTDWKLRSIAQRKEIVSRAADLLRRDRQHHASLIATEmGKALPDALEEIDVTADILSFYANGAEEFLAPTPLKVKTGQAKIINQPLGIIYCIEPWNFPYYQLARVAGPNLmAGNVVIAKHAPNVPQCALAFEKLFHDAGAPVGAYANIFLDNDQSAELIKDERIRGVALTGSERAGQAVAAQAGAALKKDTmELGGSDAFIVLDDADLDLAVKWAVWGRFANNGQVCTAAKRmIVHEKVYDAFLDGLKTAITRFRIGNPLDRDTTHGPmSSLRAmELALDQTAEAVKGGATLVAGGKRmDRKGFFmEPTILTDVSKDNPVFYQEIFGPVAVVHKVASEQAAIDLANDSPYGLGGAVFSRDIARAEKVAEQVETGmVFINTATAAAPELPFGGIKNSGFGRELSFLGIEEFINRKLVRIG 456
                            |       10        20     |  30        40        50        60        70    |   80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300     | 310 |     320       330     | 340  |    350       360       370       380       390       400       410 |     420       430       440       450      
                            1-MSE                   26-MSE                                           75-MSE                                                                  148-MSE                                                                          229-MSE                                  270-MSE                             306-MSE |                     336-MSE  |                                                                  412-MSE                                        
                                                                                                                                                                                                                                                                                                                                                 312-MSE                        343-MSE                                                                                                             

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3VZ0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3VZ0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3VZ0)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q5FTL8_GLUOX | Q5FTL8)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016620    oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    2PE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3vz0)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3vz0
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q5FTL8_GLUOX | Q5FTL8
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  Q5FTL8_GLUOX | Q5FTL8
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3VZ0)

(-) Related Entries Specified in the PDB File

3vz1 3vz2 3vz3