3VR1 - JenaLib

Title :   CRYSTAL STRUCTURE ANALYSIS OF THE TRANSLATION FACTOR RF3

Authors :   K. Kihira, Y. Shomura, N. Shibata, M. Kitamura, Y. Higuchi

Date :   03 Apr 12 (Deposition) - 05 Sep 12 (Release) - 31 Jul 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: A,B  (1x)
Biol. Unit 6: C,D  (1x)

Keywords :   Translation, Release Factor, Gtpase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Kihira, Y. Shimizu, Y. Shomura, N. Shibata, M. Kitamura, A. Nakagawa, T. Ueda, K. Ochi, Y. Higuchi
Crystal Structure Analysis Of The Translation Factor Rf3 (Release Factor 3)
Febs Lett. V. 586 3705 2012
PubMed-ID: 22975312 | Reference-DOI: 10.1016/J.FEBSLET.2012.08.029

Compounds

Molecule 1 - PEPTIDE CHAIN RELEASE FACTOR 3
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PUT7
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	DVMF_2372, PRFC
	Organism Scientific	:	DESULFOVIBRIO VULGARIS
	Organism Taxid	:	883
	Strain	:	MIYAZAKI F
	Synonym	:	RF-3

Structural Features

Chains, Units

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:	A	B
Biological Unit 6 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (1, 4)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	G4P	4	Ligand/Ion	GUANOSINE-5',3'-TETRAPHOSPHATE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	G4P	1	Ligand/Ion	GUANOSINE-5',3'-TETRAPHOSPHATE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	G4P	1	Ligand/Ion	GUANOSINE-5',3'-TETRAPHOSPHATE

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	G4P	1	Ligand/Ion	GUANOSINE-5',3'-TETRAPHOSPHATE

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	G4P	1	Ligand/Ion	GUANOSINE-5',3'-TETRAPHOSPHATE

Biological Unit 5 (1, 2)

No.	Name	Count	Type	Full Name
1	G4P	2	Ligand/Ion	GUANOSINE-5',3'-TETRAPHOSPHATE

Biological Unit 6 (1, 2)

No.	Name	Count	Type	Full Name
1	G4P	2	Ligand/Ion	GUANOSINE-5',3'-TETRAPHOSPHATE

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:22 , ALA A:23 , GLY A:24 , LYS A:25 , THR A:26 , THR A:27 , LYS A:49 , HIS A:91 , ASN A:141 , LYS A:142 , ASP A:144 , ARG A:145 , SER A:256 , ALA A:257 , ILE A:258	BINDING SITE FOR RESIDUE G4P A 601
2	AC2	SOFTWARE	ASP B:22 , ALA B:23 , GLY B:24 , LYS B:25 , THR B:26 , THR B:27 , LYS B:49 , HIS B:91 , ASN B:141 , LYS B:142 , ASP B:144 , ARG B:145 , SER B:256 , ALA B:257 , ILE B:258	BINDING SITE FOR RESIDUE G4P B 601
3	AC3	SOFTWARE	ASP C:22 , ALA C:23 , GLY C:24 , LYS C:25 , THR C:26 , THR C:27 , LYS C:49 , HIS C:91 , ASN C:141 , LYS C:142 , ASP C:144 , ARG C:145 , SER C:256 , ALA C:257 , ILE C:258	BINDING SITE FOR RESIDUE G4P C 601
4	AC4	SOFTWARE	ASP D:22 , ALA D:23 , GLY D:24 , LYS D:25 , THR D:26 , THR D:27 , LYS D:49 , HIS D:91 , ASN D:141 , LYS D:142 , ASP D:144 , ARG D:145 , SER D:256 , ALA D:257 , ILE D:258	BINDING SITE FOR RESIDUE G4P D 601

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_TR_1	PS00301	Translational (tr)-type guanine nucleotide-binding (G) domain signature.	RF3_DESVM	57-72	4	A:57-72 B:57-72 C:57-72 D:57-72

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_TR_1	PS00301	Translational (tr)-type guanine nucleotide-binding (G) domain signature.	RF3_DESVM	57-72	1	A:57-72 - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_TR_1	PS00301	Translational (tr)-type guanine nucleotide-binding (G) domain signature.	RF3_DESVM	57-72	1	- B:57-72 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_TR_1	PS00301	Translational (tr)-type guanine nucleotide-binding (G) domain signature.	RF3_DESVM	57-72	1	- - C:57-72 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_TR_1	PS00301	Translational (tr)-type guanine nucleotide-binding (G) domain signature.	RF3_DESVM	57-72	1	- - - D:57-72

Biological Unit 5 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_TR_1	PS00301	Translational (tr)-type guanine nucleotide-binding (G) domain signature.	RF3_DESVM	57-72	2	A:57-72 B:57-72 - -

Biological Unit 6 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_TR_1	PS00301	Translational (tr)-type guanine nucleotide-binding (G) domain signature.	RF3_DESVM	57-72	2	- - C:57-72 D:57-72

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:516
 aligned with RF3_DESVM | B8DIL5 from UniProtKB/Swiss-Prot  Length:529

    Alignment length:529
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520         
            RF3_DESVM     1 MSSRLEREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGAVQLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAVYEGVSTHTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLAPNPWRLESAMERYPKVEFRTTREIS 529
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhheeeeeeee....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.eeeeee..eeeeee...hhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhh.eeee.eeee.hhhhh.eeee....eeee...-----....ee.....hhhhhhhhh.hhhhhhhhhhhhh......hhhhhhh..eeeeee.hhhhh.hhhhhhhhhhhhh.....ee....ee.......eeeeeeee.--------.eeeeeeee.......eeee....eeee....ee................eeeee.........eee...........eee...eeeeeee.hhhhhhhhhhhhhhhhhhh..eeeee.....eeeee..hhhhhhhhhhhhhhhh..eeee.....eeeeee..hhhhhhhhhhhh...eeee....eeeee.hhhhhhhhhhhh...eee.eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------G_TR_1          ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vr1 A   1 MSSRLEREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSA-----IQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQA--------RMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGAVQLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAVYEGVSTHTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLAPNPWRLESAMERYPKVEFRTTREIS 529
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   |   200       210       220       230       240       250       260       270       280       290       300  |      - |     320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520         
                                                                                                                                                                                                                           194   200                                                                                                    303      312

Chain B from PDB  Type:PROTEIN  Length:516
 aligned with RF3_DESVM | B8DIL5 from UniProtKB/Swiss-Prot  Length:529

    Alignment length:529
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520         
            RF3_DESVM     1 MSSRLEREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGAVQLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAVYEGVSTHTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLAPNPWRLESAMERYPKVEFRTTREIS 529
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhheeeeeeee....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee..eeeeee...hhhhhhhhhhhhh....eeeeeee.....hhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhh.eeee.eeee.hhhhh.eeee....eeee...-----....ee.....hhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhh..eeeeee.hhhhh.hhhhhhhhhhhhh.....ee....ee.......eeeeeeee.--------.eeeeeeee..ee...eeee....eeee....ee..........ee....eeeee.........eee...........eee...eeeeeee....hhhhhhhhhhhhhhhh..eeeee.....eeeee..hhhhhhhhhhhhhhhh..eeee.....eeeeee..hhhhhhhhhhhh...eeee....eeeee.hhhhhhhhhh.....eee.eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------G_TR_1          ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vr1 B   1 MSSRLEREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSA-----IQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQA--------RMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGAVQLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAVYEGVSTHTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLAPNPWRLESAMERYPKVEFRTTREIS 529
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   |   200       210       220       230       240       250       260       270       280       290       300  |      - |     320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520         
                                                                                                                                                                                                                           194   200                                                                                                    303      312

Chain C from PDB  Type:PROTEIN  Length:516
 aligned with RF3_DESVM | B8DIL5 from UniProtKB/Swiss-Prot  Length:529

    Alignment length:529
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520         
            RF3_DESVM     1 MSSRLEREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGAVQLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAVYEGVSTHTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLAPNPWRLESAMERYPKVEFRTTREIS 529
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh.eeeeeeee....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.eeeeee..eeeeee...hhhhhhhhhhhhh....eeeeeee.....hhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhh.eeee.eeee.hhhhh.eeee....eeee...-----....ee......hhhhhhhh.hhhhhhhhhhhhh......hhhhhhh..eeeeee.hhhhh.hhhhhhhhhhhhh.....ee....ee.......eeeeeeee.--------.eeeeeeee..ee...eeee....eeee....ee..........ee....eeeee.........eee...........eee...eeeeeee....hhhhhhhhhhhhhhhh..eeeee.....eeeee..hhhhhhhhhhhhhhhh..eeee.....eeeeee..hhhhhhhhhhhh...eee.....eeeee.hhhhhhhhhh.....eee.eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------G_TR_1          ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vr1 C   1 MSSRLEREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSA-----IQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQA--------RMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGAVQLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAVYEGVSTHTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLAPNPWRLESAMERYPKVEFRTTREIS 529
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   |   200       210       220       230       240       250       260       270       280       290       300  |      - |     320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520         
                                                                                                                                                                                                                           194   200                                                                                                    303      312

Chain D from PDB  Type:PROTEIN  Length:516
 aligned with RF3_DESVM | B8DIL5 from UniProtKB/Swiss-Prot  Length:529

    Alignment length:529
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520         
            RF3_DESVM     1 MSSRLEREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGAVQLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAVYEGVSTHTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLAPNPWRLESAMERYPKVEFRTTREIS 529
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhheeeeeeee....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.eeeeee..eeeeee...hhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhh.eeee.eeee.hhhhh.eeee....eeee...-----....ee.....hhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhh..eeeeee.hhhhh.hhhhhhhhhhhhh.....ee....ee.......eeeeeeee.--------.eeeeeeee.......eeee....eeee....ee................eeeee.........eee...........eee...eeeeeee.hhhhhhhhhhhhhhhhhhh..eeeee.....eeeee..hhhhhhhhhhhhhhhh..eeee.....eeeeee..hhhhhhhhhhhh...eeee....eeeee.hhhhhhhhhhhh...eee.eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------G_TR_1          ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vr1 D   1 MSSRLEREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSA-----IQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQA--------RMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGAVQLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAVYEGVSTHTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLAPNPWRLESAMERYPKVEFRTTREIS 529
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   |   200       210       220       230       240       250       260       270       280       290       300  |      - |     320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520         
                                                                                                                                                                                                                           194   200                                                                                                    303      312

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

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Pfam Domains (0, 0)

Gene Ontology (8, 8)

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Description