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(-) Description

Title :  ORTHORHOMBIC CRYSTAL STRUCTURE OF SALMONELLA FLGA IN CLOSED FORM
 
Authors :  H. Matsunami, F. A. Samatey, K. Namba
Date :  27 Oct 11  (Deposition) - 31 Oct 12  (Release) - 06 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Bacterial Flagellum, Secretion, Disulfide Bond, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Matsunami, Y. H. Yoon, V. A. Meshcheryakov, K. Namba, F. A. Samatey
Structural Flexibility Of The Periplasmic Protein, Flga, Regulates Flagellar P-Ring Assembly In Salmonella Enterica
Sci Rep V. 6 27399 2016
PubMed-ID: 27273476  |  Reference-DOI: 10.1038/SREP27399

(-) Compounds

Molecule 1 - FLAGELLA BASAL BODY P-RING FORMATION PROTEIN FLGA
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: FLGA
    Organism Scientific: SALMONELLA TYPHIMURIUM
    Organism Taxid: 90371
    Strain: SJW1103
    Synonym: FLAGELLAR FLGA PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3VJP)

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:36 -A:59
2B:36 -B:59

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3VJP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3VJP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3VJP)

(-) Exons   (0, 0)

(no "Exon" information available for 3VJP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:198
 aligned with FLGA_SALTY | P40131 from UniProtKB/Swiss-Prot  Length:219

    Alignment length:198
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        
           FLGA_SALTY    22 QDINAQLTTWFSQRLAGFSDEVVVTLRSSPNLLPSCEQPAFSMTGSAKLWGNVNVVARCANEKRYLQVNVQATGNYVAVAAPIARGGKLTPANVTLKRGRLDQLPPRTVLDIRQIQDAVSLRDLAPGQPVQLTMIRQAWRVKAGQRVQVIANGEGFSVNAEGQAMNNAAVAQNARVRMTSGQIVSGTVDSDGNILINL 219
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh...eeeeeeee.............eeee..........eeeeee..eeeeeeeeeeeeeeeeee..............eeeeeee.hhh.............eee..............eee........eeeeeeee..eeeeeeeee........eeeeee....eeeeee.....eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3vjp A   1 QDINAQLTTWFSQRLAGFSDEVVVTLRSSPNLLPSCEQPAFSmTGSAKLWGNVNVVARCANEKRYLQVNVQATGNYVAVAAPIARGGKLTPANVTLKRGRLDQLPPRTVLDIRQIQDAVSLRDLAPGQPVQLTmIRQAWRVKAGQRVQVIANGEGFSVNAEGQAmNNAAVAQNARVRmTSGQIVSGTVDSDGNILINL 198
                                    10        20        30        40  |     50        60        70        80        90       100       110       120       130   |   140       150       160    |  170       180       190        
                                                                     43-MSE                                                                                    134-MSE                        165-MSE      178-MSE                


Chain B from PDB  Type:PROTEIN  Length:198
 aligned with FLGA_SALTY | P40131 from UniProtKB/Swiss-Prot  Length:219

    Alignment length:198
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        
           FLGA_SALTY    22 QDINAQLTTWFSQRLAGFSDEVVVTLRSSPNLLPSCEQPAFSMTGSAKLWGNVNVVARCANEKRYLQVNVQATGNYVAVAAPIARGGKLTPANVTLKRGRLDQLPPRTVLDIRQIQDAVSLRDLAPGQPVQLTMIRQAWRVKAGQRVQVIANGEGFSVNAEGQAMNNAAVAQNARVRMTSGQIVSGTVDSDGNILINL 219
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...eeeeeeee.............eee...........eeeeee..eeeeeeeeeeeeeeeeee..............eeeeeee.hhh..............ee..............ee.........eeeeeeee..eeeeeeeee........eeeeee....eeeeee.....eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3vjp B   1 QDINAQLTTWFSQRLAGFSDEVVVTLRSSPNLLPSCEQPAFSmTGSAKLWGNVNVVARCANEKRYLQVNVQATGNYVAVAAPIARGGKLTPANVTLKRGRLDQLPPRTVLDIRQIQDAVSLRDLAPGQPVQLTmIRQAWRVKAGQRVQVIANGEGFSVNAEGQAmNNAAVAQNARVRmTSGQIVSGTVDSDGNILINL 198
                                    10        20        30        40  |     50        60        70        80        90       100       110       120       130   |   140       150       160    |  170       180       190        
                                                                     43-MSE                                                                                    134-MSE                        165-MSE      178-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3VJP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3VJP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3VJP)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (FLGA_SALTY | P40131)
biological process
    GO:0044781    bacterial-type flagellum organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a bacterial-type flagellum, a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope which functions in cell motility.
cellular component
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FLGA_SALTY | P40131: 3tee 3vki

(-) Related Entries Specified in the PDB File

3tee THE SAME PROTEIN