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(-) Description

Title :  COMPUTATIONALLY DESIGNED SELF-ASSEMBLING OCTAHEDRAL CAGE PROTEIN, O333, CRYSTALLIZED IN SPACE GROUP R32
 
Authors :  M. R. Sawaya, N. P. King, W. Sheffler, D. Baker, T. O. Yeates
Date :  03 Jan 12  (Deposition) - 06 Jun 12  (Release) - 13 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D,E,F,G,H  (3x)
Keywords :  Self Assembling Octahedral Cage Design, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  N. P. King, W. Sheffler, M. R. Sawaya, B. S. Vollmar, J. P. Sumida, I. Andre, T. Gonen, T. O. Yeates, D. Baker
Computational Design Of Self-Assembling Protein Nanomaterials With Atomic Level Accuracy.
Science V. 336 1171 2012
PubMed-ID: 22654060  |  Reference-DOI: 10.1126/SCIENCE.1219364

(-) Compounds

Molecule 1 - PROPANEDIOL UTILIZATION POLYHEDRAL BODY PROTEIN PDUT
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET29B
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GenePDUT
    MutationYES
    Organism ScientificSALMONELLA ENTERICA
    Organism Taxid28901

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (3x)ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 27)

Asymmetric Unit (2, 27)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2SO426Ligand/IonSULFATE ION
Biological Unit 1 (1, 78)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2SO478Ligand/IonSULFATE ION

(-) Sites  (27, 27)

Asymmetric Unit (27, 27)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:36 , PHE A:42 , GLN B:180BINDING SITE FOR RESIDUE SO4 A 201
02AC2SOFTWAREGLU A:9 , LYS A:41 , GLY A:131 , ILE A:132 , GLY A:133 , GLY A:134BINDING SITE FOR RESIDUE SO4 A 202
03AC3SOFTWARELYS B:35 , THR B:36 , GLN C:180 , GLY C:184BINDING SITE FOR RESIDUE SO4 B 201
04AC4SOFTWAREGLU B:9 , LYS B:41 , GLY B:131 , GLY B:133 , GLY B:134BINDING SITE FOR RESIDUE SO4 B 202
05AC5SOFTWAREASP B:143 , VAL B:144 , HOH B:305BINDING SITE FOR RESIDUE SO4 B 203
06AC6SOFTWARETYR A:137 , GLN A:180 , GLY A:184 , LYS C:35 , THR C:36BINDING SITE FOR RESIDUE SO4 C 201
07AC7SOFTWAREGLU C:9 , LYS C:41 , GLY C:131 , ILE C:132 , GLY C:133 , GLY C:134BINDING SITE FOR RESIDUE SO4 C 202
08AC8SOFTWAREASP C:143 , VAL C:144 , HOH C:335BINDING SITE FOR RESIDUE SO4 C 203
09AC9SOFTWARELYS D:35 , THR D:36 , HOH D:349 , GLN E:180 , HOH E:337BINDING SITE FOR RESIDUE SO4 D 201
10BC1SOFTWARELYS C:93 , ARG D:172 , LYS F:25 , HOH F:301BINDING SITE FOR RESIDUE SO4 D 202
11BC2SOFTWAREGLU D:9 , LYS D:41 , GLY D:131 , ILE D:132 , GLY D:133 , GLY D:134 , HOH D:308BINDING SITE FOR RESIDUE SO4 D 203
12BC3SOFTWAREHIS D:78 , HOH D:310BINDING SITE FOR RESIDUE SO4 D 204
13BC4SOFTWAREVAL D:91 , ASP D:92 , LYS D:93BINDING SITE FOR RESIDUE SO4 D 205
14BC5SOFTWARELYS D:25 , ARG E:172 , HOH E:303BINDING SITE FOR RESIDUE SO4 E 201
15BC6SOFTWAREARG E:172 , HIS E:174 , HOH E:301 , HOH E:333BINDING SITE FOR RESIDUE SO4 E 202
16BC7SOFTWAREMET E:17 , LYS E:35 , THR E:36 , TYR F:137 , GLN F:180BINDING SITE FOR RESIDUE SO4 E 203
17BC8SOFTWAREGLU E:9 , LYS E:41 , GLY E:131 , ILE E:132 , GLY E:133 , GLY E:134BINDING SITE FOR RESIDUE SO4 E 204
18BC9SOFTWAREARG D:94 , GLU D:175 , ASP F:143 , VAL F:144 , SER F:145 , HOH F:302 , HOH F:305 , HOH F:329BINDING SITE FOR RESIDUE SO4 F 201
19CC1SOFTWARETYR D:137 , GLN D:180 , MET F:17 , THR F:36 , PHE F:42 , HOH F:319BINDING SITE FOR RESIDUE SO4 F 202
20CC2SOFTWAREGLU F:9 , LYS F:41 , GLY F:131 , ILE F:132 , GLY F:133 , GLY F:134BINDING SITE FOR RESIDUE SO4 F 203
21CC3SOFTWARELYS G:35 , THR G:36 , GLN G:180 , HOH G:322BINDING SITE FOR RESIDUE SO4 G 201
22CC4SOFTWAREGLU G:9 , ILE G:37 , LYS G:41 , GLY G:131 , ILE G:132 , GLY G:133 , GLY G:134BINDING SITE FOR RESIDUE SO4 G 202
23CC5SOFTWARELYS H:35 , THR H:36 , PHE H:42 , TYR H:137 , GLN H:180 , HOH H:343BINDING SITE FOR RESIDUE SO4 H 201
24CC6SOFTWARESER B:26 , GLN B:55 , LYS H:93 , ARG H:94 , ARG H:172 , HOH H:336BINDING SITE FOR RESIDUE SO4 H 202
25CC7SOFTWAREGLU H:9 , LYS H:41 , GLY H:131 , ILE H:132 , GLY H:133 , HOH H:357BINDING SITE FOR RESIDUE SO4 H 203
26CC8SOFTWAREASP H:92 , LYS H:93 , GLN H:95BINDING SITE FOR RESIDUE SO4 H 204
27CC9SOFTWAREARG H:94 , ARG H:172 , HOH H:337BINDING SITE FOR RESIDUE CL H 205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3VCD)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Ser A:38 -Pro A:39
2Ser B:38 -Pro B:39
3Ser C:38 -Pro C:39
4Ser D:38 -Pro D:39
5Ser E:38 -Pro E:39
6Ser F:38 -Pro F:39
7Ser G:38 -Pro G:39
8Ser H:38 -Pro H:39

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3VCD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3VCD)

(-) Exons   (0, 0)

(no "Exon" information available for 3VCD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:184
 aligned with Q9XDM8_SALTY | Q9XDM8 from UniProtKB/TrEMBL  Length:184

    Alignment length:184
                                                                                                                                                                                                                184 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181  | 
         Q9XDM8_SALTY     2 SQAIGILELTSIAKGMELGDAMLKSANVDLLVSKTICPGKFLLMLGGDIGAIQQAIETGTSQAGEMLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVNNAVTVASESAGEKGLLVYRSVIPRPHEAMWRQMVEG-   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhhhhhhhhhhhhh.eeeeeeeee...eeeeeeeeehhhhhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhh........eeeeeeeehhhhhhhhhhhhhhh...eeeeeee......eeeeeeeehhhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vcd A   2 SQAIGILELTSIAAGMELGDAMLKSANVDLLVSKTISPGKFLLMLGGDIGAIQQAIETGTSQAGELLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVALAVTVASSSAGAYGLLVYASLIPRPHEAMWRQMVEGL 185
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181    

Chain B from PDB  Type:PROTEIN  Length:183
 aligned with Q9XDM8_SALTY | Q9XDM8 from UniProtKB/TrEMBL  Length:184

    Alignment length:183
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181   
         Q9XDM8_SALTY     2 SQAIGILELTSIAKGMELGDAMLKSANVDLLVSKTICPGKFLLMLGGDIGAIQQAIETGTSQAGEMLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVNNAVTVASESAGEKGLLVYRSVIPRPHEAMWRQMVEG 184
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhhhhhhhhhh....eeeeeeeee...eeeeeeeeehhhhhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhh........eeeeeeeehhhhhhhhhhhhhhh...eeeeeee......eeeeeeeehhhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vcd B   2 SQAIGILELTSIAAGMELGDAMLKSANVDLLVSKTISPGKFLLMLGGDIGAIQQAIETGTSQAGELLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVALAVTVASSSAGAYGLLVYASLIPRPHEAMWRQMVEG 184
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181   

Chain C from PDB  Type:PROTEIN  Length:183
 aligned with Q9XDM8_SALTY | Q9XDM8 from UniProtKB/TrEMBL  Length:184

    Alignment length:183
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181   
         Q9XDM8_SALTY     2 SQAIGILELTSIAKGMELGDAMLKSANVDLLVSKTICPGKFLLMLGGDIGAIQQAIETGTSQAGEMLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVNNAVTVASESAGEKGLLVYRSVIPRPHEAMWRQMVEG 184
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhhhhhhhhhhhhh.eeeeeeeee...eeeeeeeeehhhhhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhh........eeeeeeeehhhhhhhhhhhhhhhh..eeeeeee......eeeeeeeehhhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vcd C   2 SQAIGILELTSIAAGMELGDAMLKSANVDLLVSKTISPGKFLLMLGGDIGAIQQAIETGTSQAGELLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVALAVTVASSSAGAYGLLVYASLIPRPHEAMWRQMVEG 184
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181   

Chain D from PDB  Type:PROTEIN  Length:183
 aligned with Q9XDM8_SALTY | Q9XDM8 from UniProtKB/TrEMBL  Length:184

    Alignment length:183
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181   
         Q9XDM8_SALTY     2 SQAIGILELTSIAKGMELGDAMLKSANVDLLVSKTICPGKFLLMLGGDIGAIQQAIETGTSQAGEMLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVNNAVTVASESAGEKGLLVYRSVIPRPHEAMWRQMVEG 184
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhhhhhhhhhhhh...eeeeeeee...eeeeeeeeehhhhhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhh........eeeeeeeehhhhhhhhhhhhhhh...eeeeeee......eeeeeeeehhhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vcd D   2 SQAIGILELTSIAAGMELGDAMLKSANVDLLVSKTISPGKFLLMLGGDIGAIQQAIETGTSQAGELLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVALAVTVASSSAGAYGLLVYASLIPRPHEAMWRQMVEG 184
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181   

Chain E from PDB  Type:PROTEIN  Length:184
 aligned with Q9XDM8_SALTY | Q9XDM8 from UniProtKB/TrEMBL  Length:184

    Alignment length:184
                                                                                                                                                                                                                184 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181  | 
         Q9XDM8_SALTY     2 SQAIGILELTSIAKGMELGDAMLKSANVDLLVSKTICPGKFLLMLGGDIGAIQQAIETGTSQAGEMLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVNNAVTVASESAGEKGLLVYRSVIPRPHEAMWRQMVEG-   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhhhhhhhhhhhhh.eeeeeeeee...eeeeeeeeehhhhhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhh........eeeeeeeehhhhhhhhhhhhhhh...eeeeeee......eeeeeeeehhhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vcd E   2 SQAIGILELTSIAAGMELGDAMLKSANVDLLVSKTISPGKFLLMLGGDIGAIQQAIETGTSQAGELLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVALAVTVASSSAGAYGLLVYASLIPRPHEAMWRQMVEGL 185
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181    

Chain F from PDB  Type:PROTEIN  Length:183
 aligned with Q9XDM8_SALTY | Q9XDM8 from UniProtKB/TrEMBL  Length:184

    Alignment length:183
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181   
         Q9XDM8_SALTY     2 SQAIGILELTSIAKGMELGDAMLKSANVDLLVSKTICPGKFLLMLGGDIGAIQQAIETGTSQAGEMLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVNNAVTVASESAGEKGLLVYRSVIPRPHEAMWRQMVEG 184
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhhhhhhhhhhhhh.eeeeeeeee...eeeeeeeeehhhhhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhh........eeeeeeeehhhhhhhhhhhhhhh...eeeeeee......eeeeeeeehhhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vcd F   2 SQAIGILELTSIAAGMELGDAMLKSANVDLLVSKTISPGKFLLMLGGDIGAIQQAIETGTSQAGELLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVALAVTVASSSAGAYGLLVYASLIPRPHEAMWRQMVEG 184
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181   

Chain G from PDB  Type:PROTEIN  Length:183
 aligned with Q9XDM8_SALTY | Q9XDM8 from UniProtKB/TrEMBL  Length:184

    Alignment length:183
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181   
         Q9XDM8_SALTY     2 SQAIGILELTSIAKGMELGDAMLKSANVDLLVSKTICPGKFLLMLGGDIGAIQQAIETGTSQAGEMLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVNNAVTVASESAGEKGLLVYRSVIPRPHEAMWRQMVEG 184
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhhhhhhhhhhhhh.eeeeeeeee...eeeeeeeeehhhhhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhh........eeeeeeeehhhhhhhhhhhhhhh...eeeeeee......eeeeeeeehhhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vcd G   2 SQAIGILELTSIAAGMELGDAMLKSANVDLLVSKTISPGKFLLMLGGDIGAIQQAIETGTSQAGELLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVALAVTVASSSAGAYGLLVYASLIPRPHEAMWRQMVEG 184
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181   

Chain H from PDB  Type:PROTEIN  Length:183
 aligned with Q9XDM8_SALTY | Q9XDM8 from UniProtKB/TrEMBL  Length:184

    Alignment length:183
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181   
         Q9XDM8_SALTY     2 SQAIGILELTSIAKGMELGDAMLKSANVDLLVSKTICPGKFLLMLGGDIGAIQQAIETGTSQAGEMLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVNNAVTVASESAGEKGLLVYRSVIPRPHEAMWRQMVEG 184
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhhhhhhhhhhhhh.eeeeeeeee...eeeeeeeeehhhhhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhh........eeeeeeeehhhhhhhhhhhhhhh...eeeeeee......eeeeeeeehhhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vcd H   2 SQAIGILELTSIAAGMELGDAMLKSANVDLLVSKTISPGKFLLMLGGDIGAIQQAIETGTSQAGELLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVALAVTVASSSAGAYGLLVYASLIPRPHEAMWRQMVEG 184
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3VCD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3VCD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3VCD)

(-) Gene Ontology  (0, 0)

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        Q9XDM8_SALTY | Q9XDM83n79 4ddf

(-) Related Entries Specified in the PDB File

3n79 STARTING STRUCTURE FOR THE DESIGN OF ADDITIONAL MUTATIONS TO CREATE A SELF-ASSEMBLING OCTAHEDRAL CAGE.