3VC7 - JenaLib

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Title :   CRYSTAL STRUCTURE OF A PUTATIVE OXIDOREDUCTASE FROM SINORHIZOBIUM MELILOTI 1021

Authors :   A. Ghosh, R. Bhoshle, R. Toro, A. Gizzi, B. Hillerich, R. Seidel, S. C. Al York Structural Genomics Research Consortium (Nysgrc)

Date :   03 Jan 12 (Deposition) - 18 Jan 12 (Release) - 02 Apr 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.23

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A  (2x)
Biol. Unit 3: B  (2x)
Biol. Unit 4: A,B  (2x)

Keywords :   Oxidoreductase, Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Ghosh, R. Bhoshle, R. Toro, A. Gizzi, B. Hillerich, S. C. Almo
Crystal Structure Of A Putative Oxidoreductase Protein From Sinorhizobium Meliloti 1021
To Be Published
PubMed: search

Molecule 1 - PUTATIVE OXIDOREDUCTASE
	Chains	:	A, B
	EC Number	:	1.-.-.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	CHS30
	Expression System Strain	:	BL21(DE3)PRIL
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	SINORHIZOBIUM MELILOTI
	Organism Taxid	:	266834
	Strain	:	1021

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:	A
Biological Unit 3 (2x)	:		B
Biological Unit 4 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (2, 8)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (2, 8)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (2, 8)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 4 (2, 16)

No.	Name	Count	Type	Full Name
1	GOL	4	Ligand/Ion	GLYCEROL
2	MSE	12	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:138 , VAL A:139 , MSE A:148 , PHE A:183	BINDING SITE FOR RESIDUE GOL A 301
2	AC2	SOFTWARE	PRO B:145	BINDING SITE FOR RESIDUE GOL B 301

(no "SS Bond" information available for 3VC7)

Asymmetric Unit

No.	Residues
1	Gly B:2	-	Asn B:3

(no "SAP(SNP)/Variant" information available for 3VC7)

(no "PROSITE Motif" information available for 3VC7)

(no "Exon" information available for 3VC7)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:237
 aligned with Q92N93_RHIME | Q92N93 from UniProtKB/TrEMBL  Length:253

    Alignment length:249
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242         
         Q92N93_RHIME     3 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPMKRNGTADEVARAVLFLAFEATFTTGAKLAVDGGLGQKLST 251
               SCOP domains d3vc7a_ A: automated matches                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....------------.hhhhhhhhhhh......hhhhhhhhhhhhhhh.......eeee.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vc7 A   4 NYQGKKAIVIGGTHGmGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGHPGmSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDT------------RAEFKTLGDNITPmKRNGTADEVARAVLFLAFEATFTTGAKLAVDGGLGQKLST 252
                                    13     |  23        33        43        53        63        73        83        93       103       113       123       133       143    |  153       163       173       183  |      -     | 203       213       223       233       243         
                                          19-MSE                                                                                                                          148-MSE                               186          199          212-MSE

Chain B from PDB  Type:PROTEIN  Length:238
 aligned with Q92N93_RHIME | Q92N93 from UniProtKB/TrEMBL  Length:253

    Alignment length:250
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251
         Q92N93_RHIME     2 GNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPMKRNGTADEVARAVLFLAFEATFTTGAKLAVDGGLGQKLST 251
               SCOP domains d3vc7b_ B: automated matches                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....------------.hhhhhhhhhhh......hhhhhhhhhhhhhhh......eeeee.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vc7 B   2 GNYQGKKAIVIGGTHGmGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGHPGmSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDT------------RAEFKTLGDNITPmKRNGTADEVARAVLFLAFEATFTTGAKLAVDGGLGQKLST 251
                                    11      | 21        31        41        51        61        71        81        91       101       111       121       131       141     | 151       161       171       181   |     -      |201       211       221       231       241       251
                                           18-MSE                                                                                                                          147-MSE                               185          198          211-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: automated matches (447)

Protein domain: automated matches (447)

Sinorhizobium meliloti [TaxId: 266834] (11)

1a	d3vc7a_	A:
1b	d3vc7b_	B:

(no "CATH Domain" information available for 3VC7)

(no "Pfam Domain" information available for 3VC7)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q92N93_RHIME | Q92N93)

molecular function
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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Ligands, Modified Residues, Ions (2, 8)

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