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Title :   CRYSTAL STRUCTURE OF THE D94N MUTANT OF ANTD, AN N-ACYLTRANSFERASE FROM BACILLUS CEREUS IN COMPLEX WITH DTDP AND COENZYME A

Authors :   R. L. Kubiak, H. M. Holden

Date :   02 Jan 12 (Deposition) - 25 Jan 12 (Release) - 22 Feb 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym./Biol. Unit : A,C,E

Keywords :   Anthrose, Acylated Sugar, Left-Handed Beta Helix, Sugar N-Acylation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. L. Kubiak, H. M. Holden
Structural Studies Of Antd: An N-Acyltransferase Involved I The Biosynthesis Of D-Anthrose.
Biochemistry V. 51 867 2012
PubMed-ID: 22220494 | Reference-DOI: 10.1021/BI201650C

Compounds

Molecule 1 - GALACTOSIDE O-ACETYLTRANSFERASE
	Chains	:	A, C, E
	EC Number	:	2.3.1.18
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28
	Expression System Strain	:	ROSETTA2 DE3
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	ANTD, BCSJ1_02085
	Mutation	:	YES
	Organism Scientific	:	BACILLUS CEREUS
	Organism Taxid	:	699184
	Strain	:	SJ1
	Synonym	:	ANTD

Structural Features

Chains, Units

		1	2	3
Asymmetric/Biological Unit	:	A	C	E

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 7)

Asymmetric/Biological Unit (3, 7)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	COA	3	Ligand/Ion	COENZYME A
3	TYD	3	Ligand/Ion	THYMIDINE-5'-DIPHOSPHATE

Sites (7, 7)

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:90 , ILE A:93 , ASN A:94 , PHE A:96 , LYS A:151 , VAL A:163 , PRO A:164 , HOH A:211 , HOH A:212 , HOH A:213 , HOH A:242 , SER E:84 , GLY E:127 , ALA E:128 , GLY E:145 , ALA E:146 , VAL E:161 , LYS E:169	BINDING SITE FOR RESIDUE COA A 189
2	AC2	SOFTWARE	ASN A:2 , SER A:3 , PHE A:4 , ARG A:43 , ASP A:45 , ASP A:46 , TYR C:31 , SER C:51 , HOH C:208	BINDING SITE FOR RESIDUE TYD A 301
3	AC3	SOFTWARE	SER A:84 , GLY A:127 , ALA A:128 , GLY A:145 , ALA A:146 , VAL A:161 , ARG A:166 , LYS A:169 , HOH A:206 , HOH A:207 , TYR C:90 , ASN C:94 , PHE C:96 , PHE C:133 , MET C:149 , LYS C:151 , VAL C:163 , PRO C:164 , HOH C:200 , HOH C:201 , HOH C:202 , HOH C:207	BINDING SITE FOR RESIDUE COA C 189
4	AC4	SOFTWARE	ARG A:86 , ARG C:86 , ARG E:86	BINDING SITE FOR RESIDUE CL C 190
5	AC5	SOFTWARE	ASN C:2 , SER C:3 , ARG C:43 , ASP C:45 , ASP C:46 , TYR E:31 , SER E:51 , TYR E:69	BINDING SITE FOR RESIDUE TYD C 301
6	AC6	SOFTWARE	GLY C:127 , ALA C:128 , ALA C:146 , VAL C:161 , LYS C:169 , HOH C:205 , TYR E:90 , PHE E:96 , PHE E:133 , MET E:149 , LYS E:151 , VAL E:163 , PRO E:164 , HOH E:205	BINDING SITE FOR RESIDUE COA E 189
7	AC7	SOFTWARE	TYR A:31 , SER A:51 , ASN E:2 , SER E:3 , ARG E:43 , ASP E:45 , ASP E:46 , HOH E:207	BINDING SITE FOR RESIDUE TYD E 301

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh..ee....ee....eeehhh.eee...eee....eeeeeeee...eee....eeeeeeeeeee....ee....eee.ee.............hhhhh..ee..eee....ee....ee....ee....ee....ee.......eeee....eeeee..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vbp A   2 NSFYSQEELKKIGFLSVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAINDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKESLDDWYIYVGVPVRKIKARKRKIVELENEFLKSM 186
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181

Chain C from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhh....ee...eee....eeehhh.eee...eee....eeeeeeee...eee....eeeeeeeeeee....ee....eee.ee.............hhhhh..ee..eee....ee....ee...eee....ee....ee.......eeee....eeeee..hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vbp C   2 NSFYSQEELKKIGFLSVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAINDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKESLDDWYIYVGVPVRKIKARKRKIVELENEFLKSMNS 188
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181

Chain E from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhh....ee...eee....eeehhhh.ee...eee....eeeeeeee...eee....eeeeeeeeeee....ee....eee.ee.............hhhhh..ee..eee....ee....ee...eee....ee....ee.......eeee....eeeee...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vbp E   2 NSFYSQEELKKIGFLSVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAINDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKESLDDWYIYVGVPVRKIKARKRKIVELENEFLKSM 186
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (1, 1)

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	Sites
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	Cis Peptide Bonds
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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

3vbi	CRYSTAL STRUCTURE OF ANTD, AN N-ACYLTRANSFERASE FROM BACILLUS CEREUS IN COMPLEX WITH DTDP-4-AMINO-4,6- DIDEOXYGLUCOSE AND COENZYME A
3vbj	CRYSTAL STRUCTURE OF ANTD, AN N-ACYLTRANSFERASE FROM BACILLUS CEREUS IN COMPLEX WITH DTDP AND 3-HYDROXYBUTYRYL- COA
3vbk	CRYSTAL STRUCTURE OF THE S84A MUTANT OF ANTD, AN N- ACYLTRANSFERASE FROM BACILLUS CEREUS IN COMPLEX WITH DTDP- 4-AMINO-4,6-DIDEOXYGLUCOSE AND COENZYME A
3vbl	CRYSTAL STRUCTURE OF THE S84C MUTANT OF ANTD, AN N- ACYLTRANSFERASE FROM BACILLUS CEREUS IN COMPLEX WITH DTDP- 4-AMINO-4,6-DIDEOXYGLUCOSE AND COENZYME A
3vbm	CRYSTAL STRUCTURE OF THE S84T MUTANT OF ANTD, AN N- ACYLTRANSFERASE FROM BACILLUS CEREUS IN COMPLEX WITH DTDP AND COENZYME A
3vbn	CRYSTAL STRUCTURE OF THE D94A MUTANT OF ANTD, AN N- ACYLTRANSFERASE FROM BACILLUS CEREUS IN COMPLEX WITH DTDP AND COENZYME A

Description