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(-) Description

Title :  CRYSTAL STRUCTURE OF 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE FROM BURKHOLDERIA THAILANDENSIS
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  29 Dec 11  (Deposition) - 18 Jan 12  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J
Keywords :  Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Burkolderia Thailandensis, Melioidosis, Ketopantoate Hydroxymethyltransferase (Kphmt), Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Baugh, L. A. Gallagher, R. Patrapuvich, M. C. Clifton, A. S. Gardberg, T. E. Edwards, B. Armour, D. W. Begley, S. H. Dieterich, D. M. Dranow, J. Abendroth, J. W. Fairman, D. Fox, B. L. Staker, I. Phan, A. Gillespie, R. Choi, S. Nakazawa-Hewitt, M. T. Nguyen, A. Napuli, L. Barrett, G. W. Buchko, R. Stacy, P. J. Myler, L. J. Stewart, C. Manoil W. C. Van Voorhis
Combining Functional And Structural Genomics To Sample The Essential Burkholderia Structome.
Plos One V. 8 53851 2013
PubMed-ID: 23382856  |  Reference-DOI: 10.1371/JOURNAL.PONE.0053851

(-) Compounds

Molecule 1 - 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
    Chains: A, B, C, D, E, F, G, H, I, J
    EC Number: 2.1.2.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PAVA0421
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BTH_I1311, PANB
    Organism Scientific: BURKHOLDERIA THAILANDENSIS
    Organism Taxid: 271848
    Strain: E264
    Synonym: KETOPANTOATE HYDROXYMETHYLTRANSFERASE, KPHMT

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric/Biological Unit : ABCDEFGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric/Biological Unit (2, 12)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2EDO11Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:71 , ASP A:72 , TYR A:75 , HOH A:762 , TYR F:75BINDING SITE FOR RESIDUE EDO A 272
02AC2SOFTWARETYR B:75 , ARG B:82 , GLN G:60 , HOH G:452BINDING SITE FOR RESIDUE EDO B 272
03AC3SOFTWARELYS C:120 , HIS C:144 , VAL C:222 , HOH C:286 , HOH C:465 , HOH C:1168BINDING SITE FOR RESIDUE EDO C 272
04AC4SOFTWARETYR D:75 , ALA D:78 , ARG D:82 , HOH I:296BINDING SITE FOR RESIDUE EDO D 272
05AC5SOFTWARELYS E:120 , HIS E:144 , HOH E:433 , HOH E:751BINDING SITE FOR RESIDUE EDO E 272
06AC6SOFTWAREGLN B:60 , ARG G:82 , HOH G:281 , HOH G:295BINDING SITE FOR RESIDUE EDO G 272
07AC7SOFTWARELYS G:120 , HIS G:144 , VAL G:222 , HOH G:282 , HOH G:1183 , HOH G:1692BINDING SITE FOR RESIDUE EDO G 273
08AC8SOFTWAREGLN C:60 , ARG H:82 , HOH H:331BINDING SITE FOR RESIDUE EDO H 272
09AC9SOFTWARELYS I:120 , HIS I:144 , HOH I:279 , HOH I:1195BINDING SITE FOR RESIDUE EDO I 272
10BC1SOFTWAREHOH D:648 , HOH I:1794BINDING SITE FOR RESIDUE CL I 273
11BC2SOFTWAREGLN E:60 , TYR J:75 , ARG J:82 , HOH J:457BINDING SITE FOR RESIDUE EDO J 272
12BC3SOFTWARELYS J:120 , HOH J:289 , HOH J:1906 , HOH J:2469BINDING SITE FOR RESIDUE EDO J 273

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3VAV)

(-) Cis Peptide Bonds  (10, 10)

Asymmetric/Biological Unit
No.Residues
1Phe A:264 -Pro A:265
2Phe B:264 -Pro B:265
3Phe C:264 -Pro C:265
4Phe D:264 -Pro D:265
5Phe E:264 -Pro E:265
6Phe F:264 -Pro F:265
7Phe G:264 -Pro G:265
8Phe H:264 -Pro H:265
9Phe I:264 -Pro I:265
10Phe J:264 -Pro J:265

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3VAV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3VAV)

(-) Exons   (0, 0)

(no "Exon" information available for 3VAV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:260
 aligned with PANB_BURTA | Q2SYZ1 from UniProtKB/Swiss-Prot  Length:271

    Alignment length:263
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268   
           PANB_BURTA     9 RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVFPGKRPRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF 271
               SCOP domains d3vava_ A: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh..eeeee..hhhhhhhhhhh...eeee..hhhhhh.........hhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhh---....hhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhh...eeee.......eeeehhhhhh...................hhhhhhhhhhhhhhh....hhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vav A   9 RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVGLTPQSVHAFG---VQGKTEAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVFPGKRPRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF 271
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       | - |     168       178       188       198       208       218       228       238       248       258       268   
                                                                                                                                                                             156 160                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:260
 aligned with PANB_BURTA | Q2SYZ1 from UniProtKB/Swiss-Prot  Length:271

    Alignment length:263
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268   
           PANB_BURTA     9 RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVFPGKRPRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF 271
               SCOP domains d3vavb_ B: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh..eeeee..hhhhhhhhhhh...eeee..hhhhhh.........hhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhh.......hhhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhh...eeee.......eeeehhhhhh...---.............hhhhhhhhhhhhhhh....hhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vav B   9 RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVF---RPRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF 271
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228 |   | 238       248       258       268   
                                                                                                                                                                                                                                                       230 234                                     


Chain C from PDB  Type:PROTEIN  Length:243
 aligned with PANB_BURTA | Q2SYZ1 from UniProtKB/Swiss-Prot  Length:271

    Alignment length:263
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268   
           PANB_BURTA     9 RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVFPGKRPRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF 271
               SCOP domains d3vavc_ C: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhh...eeeee..hhhhhhhhhhh...eeee..hhhhhh.........hhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhh...eee...hhhhhhhhhhhhhh...eeeee.--------------------.hhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhh...eeee.......eeeehhhhhh...................hhhhhhhhhhhhhhh....hhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vav C   9 RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVG--------------------GAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVFPGKRPRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF 271
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       | -         -       168       178       188       198       208       218       228       238       248       258       268   
                                                                                                                                                                   146                  167                                                                                                        


Chain D from PDB  Type:PROTEIN  Length:259
 aligned with PANB_BURTA | Q2SYZ1 from UniProtKB/Swiss-Prot  Length:271

    Alignment length:263
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268   
           PANB_BURTA     9 RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVFPGKRPRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF 271
               SCOP domains d3vavd_ D: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh..eeeee..hhhhhhhhhhh...eeee..hhhhhh.........hhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhh...eee...hhhhhhhhhhhhhh...eeeeee.hhhhh...----....hhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhh...eeee.......eeeehhhhhh...................hhhhhhhhhhhhhhh....hhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vav D   9 RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVGLTPQSVHAF----VQGKTEAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVFPGKRPRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF 271
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148      |  - |     168       178       188       198       208       218       228       238       248       258       268   
                                                                                                                                                                            155  160                                                                                                               


Chain E from PDB  Type:PROTEIN  Length:251
 aligned with PANB_BURTA | Q2SYZ1 from UniProtKB/Swiss-Prot  Length:271

    Alignment length:263
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268   
           PANB_BURTA     9 RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVFPGKRPRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF 271
               SCOP domains d3vave_ E: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh..eeeee..hhhhhhhhhhh...eeee..hhhhhh.........hhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhh...eeeeee.....------------.hhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhh...eeee.......eeeehhhhhh...................hhhhhhhhhhhhhhh....hhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vav E   9 RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVGLTPQS------------TEAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVFPGKRPRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF 271
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148  |      -     | 168       178       188       198       208       218       228       238       248       258       268   
                                                                                                                                                                        151          164                                                                                                           


Chain F from PDB  Type:PROTEIN  Length:253
 aligned with PANB_BURTA | Q2SYZ1 from UniProtKB/Swiss-Prot  Length:271

    Alignment length:263
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268   
           PANB_BURTA     9 RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVFPGKRPRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF 271
               SCOP domains d3vavf_ F: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh..eeeee..hhhhhhhhhhh...eeee..hhhhhh.........hhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhh-------.hhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhh...eeee.......eeeehhhhhh...---.............hhhhhhhhhhhhhhh....hhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vav F   9 RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVGLTPQSVHAFG-------TEAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVF---RPRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF 271
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       | -     | 168       178       188       198       208       218       228 |   | 238       248       258       268   
                                                                                                                                                                             156     164                                                               230 234                                     


Chain G from PDB  Type:PROTEIN  Length:239
 aligned with PANB_BURTA | Q2SYZ1 from UniProtKB/Swiss-Prot  Length:271

    Alignment length:263
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268   
           PANB_BURTA     9 RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVFPGKRPRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF 271
               SCOP domains d3vavg_ G: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh..eeeee..hhhhhhhhhhh...eeee..hhhhhh.........hhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhh...eeeee.--------------------.hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhh...eeee.......eeeehhhhhh...----............hhhhhhhhhhhhhhh....hhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vav G   9 RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVG--------------------GAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVF----PRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF 271
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       | -         -       168       178       188       198       208       218       228 |    |238       248       258       268   
                                                                                                                                                                   146                  167                                                            230  235                                    


Chain H from PDB  Type:PROTEIN  Length:263
 aligned with PANB_BURTA | Q2SYZ1 from UniProtKB/Swiss-Prot  Length:271

    Alignment length:263
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268   
           PANB_BURTA     9 RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVFPGKRPRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF 271
               SCOP domains d3vavh_ H: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh..eeeee..hhhhhhhhhhh...eeee..hhhhhh.........hhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhh.......hhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhh...eeee.......eeeehhhhhh...................hhhhhhhhhhhhhhh....hhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vav H   9 RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVFPGKRPRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF 271
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268   


Chain I from PDB  Type:PROTEIN  Length:245
 aligned with PANB_BURTA | Q2SYZ1 from UniProtKB/Swiss-Prot  Length:271

    Alignment length:263
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268   
           PANB_BURTA     9 RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVFPGKRPRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF 271
               SCOP domains d3vavi_ I: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh..eeeee..hhhhhhhhhhh...eeee..hhhhhh.........hhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhh...eeeee.------------------.hhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhh...eeee.......eeeehhhhhh...................hhhhhhhhhhhhhhh....hhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vav I   9 RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVG------------------EAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVFPGKRPRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF 271
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       | -         -      |168       178       188       198       208       218       228       238       248       258       268   
                                                                                                                                                                   146                165                                                                                                          


Chain J from PDB  Type:PROTEIN  Length:263
 aligned with PANB_BURTA | Q2SYZ1 from UniProtKB/Swiss-Prot  Length:271

    Alignment length:263
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268   
           PANB_BURTA     9 RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVFPGKRPRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF 271
               SCOP domains d3vavj_ J: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh..eeeee..hhhhhhhhhhh...eeee..hhhhhh.........hhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhh.......hhhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhh...eeee.......eeeehhhhhh...................hhhhhhhhhhhhhhh....hhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vav J   9 RPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVERAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTRELSIPTIGIGAGAECSGQVLVLHDMLGVFPGKRPRFVKDFMQGQPSIFAAVEAYVRAVKDGSFPGPEHSF 271
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 10)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3VAV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3VAV)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (PANB_BURTA | Q2SYZ1)
molecular function
    GO:0003864    3-methyl-2-oxobutanoate hydroxymethyltransferase activity    Catalysis of the reaction: 5,10-methylenetetrahydrofolate + 3-methyl-2-oxobutanoate = tetrahydrofolate + 2-dehydropantoate.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0015940    pantothenate biosynthetic process    The chemical reactions and pathways resulting in the formation of pantothenate, the anion of pantothenic acid. It is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  3vav
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  2.1.2.11
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3VAV)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3VAV)