3V9R - JenaLib

Title :   CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE MHF COMPLEX

Authors :   H. Yang, T. Zhang, C. Zhong, H. Li, J. Zhou, J. Ding

Date :   28 Dec 11 (Deposition) - 29 Feb 12 (Release) - 29 Feb 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Mhf1, Mhf2, Histone Fold, Fanconi Anemia, Dna Repair, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Yang, T. Zhang, Y. Tao, L. Wu, H. T. Li, J. Q. Zhou, C. Zhong, J. Ding
Saccharomyces Cerevisiae Mhf Complex Structurally Resembles The Histones (H3-H4)(2) Heterotetramer And Functions As A Heterotetramer
Structure V. 20 364 2012
PubMed-ID: 22325783 | Reference-DOI: 10.1016/J.STR.2011.12.012

Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN YOL086W-A
	Chains	:	A, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PETDUET
	Expression System Strain	:	BL21(DE3) CODON PLUS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	YOL086W-A
	Organism Common	:	YEAST
	Organism Scientific	:	SACCHAROMYCES CEREVISIAE
	Organism Taxid	:	559292
	Strain	:	ATCC 204508 / S288C
	Synonym	:	MHF1

Molecule 2 - UNCHARACTERIZED PROTEIN YDL160C-A
	Chains	:	B, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3) CODON PLUS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	YDL160C-A
	Organism Common	:	YEAST
	Organism Scientific	:	SACCHAROMYCES CEREVISIAE
	Organism Taxid	:	559292
	Strain	:	ATCC 204508 / S288C
	Synonym	:	MHF2

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 15)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:88
 aligned with MHF1_YEAST | Q3E835 from UniProtKB/Swiss-Prot  Length:90

    Alignment length:88
                                    11        21        31        41        51        61        71        81        
            MHF1_YEAST    2 NDDEDRAQLKARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERVTQ 89
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhh..hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  3v9r A  2 NDDEDRAQLKARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEmGSDLQAFARHAGRGVVNKSDLmLYLRKQPDLQERVTQ 89
                                    11        21        31        41        51|       61        71  |     81        
                                                                             52-MSE                74-MSE

Chain B from PDB  Type:PROTEIN  Length:73
 aligned with MHF2_YEAST | Q3E829 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:84
                                                                                                          80    
                                    10        20        30        40        50        60        70        80    
            MHF2_YEAST    1 MLSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIVGLLLMDM----  -
               SCOP domains ------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhh........ee...hhhhhhhhhhhhhhhhhhhhhhhhhh.-----------.hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                  3v9r B  1 mLSKEALIKILSQNEGGNDmKIADEVVPmIQKYLDIFIDEAVLRSLQSHKDI-----------LSHQDLERIVGLLLmDmLEHH 84
                            |       10        20        30        40        50 |       -   |    70       |80    
                            1-MSE             20-MSE   29-MSE                 52          64            78-MSE  
                                                                                                          80-MSE

Chain C from PDB  Type:PROTEIN  Length:87
 aligned with MHF1_YEAST | Q3E835 from UniProtKB/Swiss-Prot  Length:90

    Alignment length:87
                                    12        22        32        42        52        62        72        82       
            MHF1_YEAST    3 DDEDRAQLKARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERVTQ 89
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhh..hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                  3v9r C  3 DDEDRAQLKARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEmGSDLQAFARHAGRGVVNKSDLmLYLRKQPDLQERVTQ 89
                                    12        22        32        42        52        62        72 |      82       
                                                                            52-MSE                74-MSE

Chain D from PDB  Type:PROTEIN  Length:72
 aligned with MHF2_YEAST | Q3E829 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:80
                                    10        20        30        40        50        60        70        80
            MHF2_YEAST    1 MLSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIVGLLLMDM 80
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh........ee...hhhhhhhhhhhhhhhhhhhhhhhhhhh.--------.eehhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                  3v9r D  1 mLSKEALIKILSQNEGGNDmKIADEVVPmIQKYLDIFIDEAVLRSLQSHKDIN--------LELSHQDLERIVGLLLmDm 80
                            |       10        20        30        40        50  |      - |      70       |80
                            |                 20-MSE   29-MSE                  53       62              78-MSE
                            1-MSE                                                                         80-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (7, 12)

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Description