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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE FUMARYLACETOACETATE ISOMERASE/HYDROLASE FROM OLEISPIRA ANTARCTICA
 
Authors :  P. J. Stogios, O. Kagan, R. Di Leo, A. Bochkarev, A. M. Edwards, A. Savch A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  20 Dec 11  (Deposition) - 18 Jan 12  (Release) - 07 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B (1x),E (1x)
Biol. Unit 3:  C,F  (1x)
Biol. Unit 4:  A  (1x)
Biol. Unit 5:  B  (1x)
Biol. Unit 6:  C  (1x)
Biol. Unit 7:  D  (1x)
Biol. Unit 8:  E  (1x)
Biol. Unit 9:  F  (1x)
Keywords :  Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Ocean Metagenomics, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Kube, T. N. Chernikova, Y. Al-Ramahi, A. Beloqui, N. Lopez-Cortez, M. E. Guazzaroni, H. J. Heipieper, S. Klages, O. R. Kotsyurbenko, I. Langer, T. Y. Nechitaylo, H. Lunsdorf, M. Fernandez, S. Juarez, S. Ciordia, A. Singer, O. Kagan, O. Egorova, P. Alain Petit, P. Stogios, Y. Kim, A. Tchigvintsev, R. Flick, R. Denaro, M. Genovese, J. P. Albar, O. N. Reva, M. Martinez-Gomariz, H. Tran, M. Ferrer, A. Savchenko, A. F. Yakunin, M. M. Yakimov, O. V. Golyshina, R. Reinhardt, P. N. Golyshin
Genome Sequence And Functional Genomic Analysis Of The Oil-Degrading Bacterium Oleispira Antarctica.
Nat Commun V. 4 2156 2013
PubMed-ID: 23877221  |  Reference-DOI: 10.1038/NCOMMS3156

(-) Compounds

Molecule 1 - PUTATIVE FUMARYLACETOACETATE ISOMERASE/HYDROLASE
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TV-L
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Scientific: OLEISPIRA ANTARCTICA
    Organism Taxid: 188908

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A  D  
Biological Unit 2 (1x):  B (1x)  E (1x) 
Biological Unit 3 (1x):   C  F
Biological Unit 4 (1x): A     
Biological Unit 5 (1x):  B    
Biological Unit 6 (1x):   C   
Biological Unit 7 (1x):    D  
Biological Unit 8 (1x):     E 
Biological Unit 9 (1x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 40)

Asymmetric Unit (4, 40)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION
2MSE18Mod. Amino AcidSELENOMETHIONINE
3TAR9Ligand/IonD(-)-TARTARIC ACID
4ZN7Ligand/IonZINC ION
Biological Unit 1 (3, 12)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2MSE6Mod. Amino AcidSELENOMETHIONINE
3TAR4Ligand/IonD(-)-TARTARIC ACID
4ZN-1Ligand/IonZINC ION
Biological Unit 2 (3, 5)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE
3TAR1Ligand/IonD(-)-TARTARIC ACID
4ZN-1Ligand/IonZINC ION
Biological Unit 3 (3, 11)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2MSE6Mod. Amino AcidSELENOMETHIONINE
3TAR3Ligand/IonD(-)-TARTARIC ACID
4ZN-1Ligand/IonZINC ION
Biological Unit 4 (3, 6)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE
3TAR2Ligand/IonD(-)-TARTARIC ACID
4ZN-1Ligand/IonZINC ION
Biological Unit 5 (3, 5)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE
3TAR1Ligand/IonD(-)-TARTARIC ACID
4ZN-1Ligand/IonZINC ION
Biological Unit 6 (3, 6)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE
3TAR2Ligand/IonD(-)-TARTARIC ACID
4ZN-1Ligand/IonZINC ION
Biological Unit 7 (3, 6)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE
3TAR2Ligand/IonD(-)-TARTARIC ACID
4ZN-1Ligand/IonZINC ION
Biological Unit 8 (3, 5)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE
3TAR1Ligand/IonD(-)-TARTARIC ACID
4ZN-1Ligand/IonZINC ION
Biological Unit 9 (3, 5)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE
3TAR1Ligand/IonD(-)-TARTARIC ACID
4ZN-1Ligand/IonZINC ION

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:69 , GLU A:71 , ASP A:100 , TAR A:303 , HOH A:583BINDING SITE FOR RESIDUE ZN A 301
02AC2SOFTWAREHIS A:175 , HIS A:179 , TAR A:305 , HOH A:602BINDING SITE FOR RESIDUE ZN A 302
03AC3SOFTWAREVAL A:21 , GLY A:22 , ARG A:23 , HIS A:28 , PHE A:43 , GLU A:69 , GLU A:71 , ASP A:100 , ARG A:104 , GLN A:107 , TRP A:117 , LYS A:121 , THR A:192 , ZN A:301 , ACT A:304 , HOH A:581 , HOH A:582 , HOH A:583BINDING SITE FOR RESIDUE TAR A 303
04AC4SOFTWAREARG A:23 , ASN A:34 , GLN A:107 , LYS A:111 , TAR A:303 , HOH A:489 , HOH A:582BINDING SITE FOR RESIDUE ACT A 304
05AC5SOFTWARESER A:39 , HIS A:179 , ZN A:302 , HOH A:602 , HOH A:629 , HOH A:630 , ASN B:153 , ARG D:119BINDING SITE FOR RESIDUE TAR A 305
06AC6SOFTWAREGLU B:69 , GLU B:71 , ASP B:100 , TAR B:302 , HOH B:580BINDING SITE FOR RESIDUE ZN B 301
07AC7SOFTWAREVAL B:21 , GLY B:22 , ARG B:23 , HIS B:28 , PHE B:43 , GLU B:69 , GLU B:71 , ASP B:100 , ARG B:104 , GLN B:107 , TRP B:117 , LYS B:121 , THR B:192 , ZN B:301 , ACT B:303 , HOH B:550 , HOH B:580BINDING SITE FOR RESIDUE TAR B 302
08AC8SOFTWAREARG B:23 , ARG B:104 , GLN B:107 , LYS B:111 , TAR B:302BINDING SITE FOR RESIDUE ACT B 303
09AC9SOFTWAREGLU C:69 , GLU C:71 , ASP C:100 , TAR C:302 , HOH C:534BINDING SITE FOR RESIDUE ZN C 301
10BC1SOFTWAREVAL C:21 , GLY C:22 , ARG C:23 , HIS C:28 , PHE C:43 , GLU C:69 , GLU C:71 , ASP C:100 , ARG C:104 , GLN C:107 , TRP C:117 , LYS C:121 , THR C:192 , ZN C:301 , ACT C:304 , HOH C:534 , HOH C:535 , HOH C:537BINDING SITE FOR RESIDUE TAR C 302
11BC2SOFTWAREPRO C:40 , PHE C:167 , PRO C:168 , PRO C:171 , LEU C:172 , HIS C:175 , HOH C:540 , HOH C:541 , HOH C:549BINDING SITE FOR RESIDUE TAR C 303
12BC3SOFTWAREARG C:23 , ASN C:34 , LYS C:111 , TAR C:302 , HOH C:536BINDING SITE FOR RESIDUE ACT C 304
13BC4SOFTWAREGLU D:69 , GLU D:71 , ASP D:100 , TAR D:302 , HOH D:523BINDING SITE FOR RESIDUE ZN D 301
14BC5SOFTWAREVAL D:21 , GLY D:22 , HIS D:28 , PHE D:43 , GLU D:69 , GLU D:71 , ASP D:100 , ARG D:104 , GLN D:107 , TRP D:117 , LYS D:121 , GLY D:191 , THR D:192 , ZN D:301 , ACT D:304 , HOH D:523BINDING SITE FOR RESIDUE TAR D 302
15BC6SOFTWAREPHE D:167 , PRO D:171 , HIS D:175 , HOH D:527 , HOH D:543BINDING SITE FOR RESIDUE TAR D 303
16BC7SOFTWAREARG D:23 , ASN D:34 , LYS D:111 , TAR D:302 , HOH D:402 , HOH D:524BINDING SITE FOR RESIDUE ACT D 304
17BC8SOFTWAREGLU E:69 , GLU E:71 , ASP E:100 , TAR E:302 , HOH E:525BINDING SITE FOR RESIDUE ZN E 301
18BC9SOFTWAREVAL E:21 , GLY E:22 , ARG E:23 , HIS E:28 , PHE E:43 , GLU E:69 , GLU E:71 , ASP E:100 , ARG E:104 , GLN E:107 , TRP E:117 , LYS E:121 , THR E:192 , ZN E:301 , ACT E:303 , HOH E:525 , HOH E:526 , HOH E:527BINDING SITE FOR RESIDUE TAR E 302
19CC1SOFTWAREARG E:23 , ASN E:34 , LYS E:111 , TAR E:302 , HOH E:527 , HOH E:528BINDING SITE FOR RESIDUE ACT E 303
20CC2SOFTWAREGLU F:69 , GLU F:71 , ASP F:100 , TAR F:302 , HOH F:593BINDING SITE FOR RESIDUE ZN F 301
21CC3SOFTWAREVAL F:21 , GLY F:22 , ARG F:23 , HIS F:28 , PHE F:43 , GLU F:69 , GLU F:71 , ASP F:100 , ARG F:104 , GLN F:107 , TRP F:117 , LYS F:121 , GLY F:191 , THR F:192 , ZN F:301 , ACT F:303 , HOH F:593 , HOH F:594 , HOH F:595BINDING SITE FOR RESIDUE TAR F 302
22CC4SOFTWAREARG F:23 , ASN F:34 , LYS F:111 , TAR F:302 , HOH F:472 , HOH F:595BINDING SITE FOR RESIDUE ACT F 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3V77)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Ala A:2 -Glu A:3
2Gly A:54 -Pro A:55
3Gly B:54 -Pro B:55
4Gly C:54 -Pro C:55
5Gly D:54 -Pro D:55
6Leu E:6 -Asn E:7
7Gly E:54 -Pro E:55
8Gly F:54 -Pro F:55

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3V77)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3V77)

(-) Exons   (0, 0)

(no "Exon" information available for 3V77)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:224
 aligned with D2YW46_OLEAN | D2YW46 from UniProtKB/TrEMBL  Length:224

    Alignment length:224
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    
         D2YW46_OLEAN     1 MAELILNQRPYPRDLGKIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILIGKALSRASTEQVAESIAGIGLGLDLTLRDVQDQLKEKGHPWERAKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEMLFPILPLIAHMSEHFSLQPGDVILTGTPAGVGPLEVGDSLSAKLSLEDNVLLTCDGVVI 224
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee..ee......eeeeee..hhhhhhhh........eeeeee...eee...eee.......eee.eeeeeee.......hhhhhhhheeeeeeee..eehhhhhhhhhh...hhhhhh....eee.........hhhhhh.eeeeeee..eeeeeee.hhh..hhhhhhhhhhhhh......eee.......ee.....eeeeeeee..eeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v77 A   1 mAELILNQRPYPRDLGKIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILIGKALSRASTEQVAESIAGIGLGLDLTLRDVQDQLKEKGHPWERAKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEmLFPILPLIAHmSEHFSLQPGDVILTGTPAGVGPLEVGDSLSAKLSLEDNVLLTCDGVVI 224
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    |  170     | 180       190       200       210       220    
                            |                                                                                                                                                                 165-MSE    176-MSE                                            
                            1-MSE                                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:224
 aligned with D2YW46_OLEAN | D2YW46 from UniProtKB/TrEMBL  Length:224

    Alignment length:224
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    
         D2YW46_OLEAN     1 MAELILNQRPYPRDLGKIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILIGKALSRASTEQVAESIAGIGLGLDLTLRDVQDQLKEKGHPWERAKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEMLFPILPLIAHMSEHFSLQPGDVILTGTPAGVGPLEVGDSLSAKLSLEDNVLLTCDGVVI 224
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee..ee......eeeeee..hhhhhhhh........eeeeee...eee...ee........eee.eeeeeee.......hhhhhhhheeeeeeee..eehhhhhhhhhhh..hhhhhh....eee.........hhhhhh.eeeeeee..eeeeeee......hhhhhhhhhhhhh......eee.......ee.....eeeeeeee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v77 B   1 mAELILNQRPYPRDLGKIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILIGKALSRASTEQVAESIAGIGLGLDLTLRDVQDQLKEKGHPWERAKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEmLFPILPLIAHmSEHFSLQPGDVILTGTPAGVGPLEVGDSLSAKLSLEDNVLLTCDGVVI 224
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    |  170     | 180       190       200       210       220    
                            1-MSE                                                                                                                                                             165-MSE    176-MSE                                            


Chain C from PDB  Type:PROTEIN  Length:224
 aligned with D2YW46_OLEAN | D2YW46 from UniProtKB/TrEMBL  Length:224

    Alignment length:224
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    
         D2YW46_OLEAN     1 MAELILNQRPYPRDLGKIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILIGKALSRASTEQVAESIAGIGLGLDLTLRDVQDQLKEKGHPWERAKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEMLFPILPLIAHMSEHFSLQPGDVILTGTPAGVGPLEVGDSLSAKLSLEDNVLLTCDGVVI 224
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeee..hhhhhhhh........eeeeee...eee...eee.......eee.eeeeeee.......hhhhhhhheeeeeeee..eehhhhhhhhhh...hhhhhh....eee...ee....hhhhhh.eeeeeee..eeeeeee.hhh..hhhhhhhhhhhhh......eee.......ee.....eeeeeeee..eeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v77 C   1 mAELILNQRPYPRDLGKIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILIGKALSRASTEQVAESIAGIGLGLDLTLRDVQDQLKEKGHPWERAKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEmLFPILPLIAHmSEHFSLQPGDVILTGTPAGVGPLEVGDSLSAKLSLEDNVLLTCDGVVI 224
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    |  170     | 180       190       200       210       220    
                            1-MSE                                                                                                                                                             165-MSE    176-MSE                                            


Chain D from PDB  Type:PROTEIN  Length:224
 aligned with D2YW46_OLEAN | D2YW46 from UniProtKB/TrEMBL  Length:224

    Alignment length:224
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    
         D2YW46_OLEAN     1 MAELILNQRPYPRDLGKIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILIGKALSRASTEQVAESIAGIGLGLDLTLRDVQDQLKEKGHPWERAKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEMLFPILPLIAHMSEHFSLQPGDVILTGTPAGVGPLEVGDSLSAKLSLEDNVLLTCDGVVI 224
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee..ee......eeeee...hhhhhhhh.........eeeee...eee...ee........eee.eeeeeee.......hhhhhhhheeeeeeee..eehhhhhhhhhhh..hhhhhh....eee...ee......hhhh.eeeeeee..eeeeeee.hhh..hhhhhhhhhhhhh......eee.......ee.....eeeeeeee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v77 D   1 mAELILNQRPYPRDLGKIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILIGKALSRASTEQVAESIAGIGLGLDLTLRDVQDQLKEKGHPWERAKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEmLFPILPLIAHmSEHFSLQPGDVILTGTPAGVGPLEVGDSLSAKLSLEDNVLLTCDGVVI 224
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    |  170     | 180       190       200       210       220    
                            1-MSE                                                                                                                                                             165-MSE    176-MSE                                            


Chain E from PDB  Type:PROTEIN  Length:224
 aligned with D2YW46_OLEAN | D2YW46 from UniProtKB/TrEMBL  Length:224

    Alignment length:224
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    
         D2YW46_OLEAN     1 MAELILNQRPYPRDLGKIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILIGKALSRASTEQVAESIAGIGLGLDLTLRDVQDQLKEKGHPWERAKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEMLFPILPLIAHMSEHFSLQPGDVILTGTPAGVGPLEVGDSLSAKLSLEDNVLLTCDGVVI 224
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeee..hhhhhhhh........eeeeee...eee...ee........eee.eeeeeee.......hhhhhhhheeeeeeee..eehhhhhhhhhhh..hhhhhh....eee..........hhhhh.eeeeeee..eeeeeee.hhh..hhhhhhhhhh.........eee.......ee.....eeeeeeee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v77 E   1 mAELILNQRPYPRDLGKIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILIGKALSRASTEQVAESIAGIGLGLDLTLRDVQDQLKEKGHPWERAKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEmLFPILPLIAHmSEHFSLQPGDVILTGTPAGVGPLEVGDSLSAKLSLEDNVLLTCDGVVI 224
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    |  170     | 180       190       200       210       220    
                            1-MSE                                                                                                                                                             165-MSE    176-MSE                                            


Chain F from PDB  Type:PROTEIN  Length:224
 aligned with D2YW46_OLEAN | D2YW46 from UniProtKB/TrEMBL  Length:224

    Alignment length:224
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    
         D2YW46_OLEAN     1 MAELILNQRPYPRDLGKIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILIGKALSRASTEQVAESIAGIGLGLDLTLRDVQDQLKEKGHPWERAKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEMLFPILPLIAHMSEHFSLQPGDVILTGTPAGVGPLEVGDSLSAKLSLEDNVLLTCDGVVI 224
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee..ee......eeeeee..hhhhhhhh........eeeeee...eee...eee.......eee.eeeeeee.......hhhhhhhheeeeeeee..eehhhhhhhhhhh..hhhhhh....eee...........hhhh.eeeeeee..eeeeeee.hhh..hhhhhhhhhhhhh......eee.......ee.....eeeeeeee..eeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v77 F   1 mAELILNQRPYPRDLGKIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILIGKALSRASTEQVAESIAGIGLGLDLTLRDVQDQLKEKGHPWERAKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEmLFPILPLIAHmSEHFSLQPGDVILTGTPAGVGPLEVGDSLSAKLSLEDNVLLTCDGVVI 224
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    |  170     | 180       190       200       210       220    
                            1-MSE                                                                                                                                                             165-MSE    176-MSE
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(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3V77)

(-) CATH Domains  (0, 0 ; only for superseded entry 3L53: 1,6)

(no "CATH Domain" information available for 3V77, only for superseded entry 3L53 replaced by 3V77)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3V77)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (D2YW46_OLEAN | D2YW46)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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 Related Entries

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