3V68 - JenaLib

Title :   CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS PF2050, A MEMBER OF DUF2666 FAMILY PROTEIN

Authors :   B. G. Han, B. I. Lee

Date :   19 Dec 11 (Deposition) - 18 Apr 12 (Release) - 26 Jun 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.56

Chains :   Asym./Biol. Unit : A

Keywords :   Duf2666, Double Stranded Dna, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. G. Han, K. C. Jeong, J. W. Cho, B. C. Jeong, H. K. Song, J. Y. Lee, D. H. Shin, S. Lee, B. I. Lee
Crystal Structure Of Pyrococcus Furiosus Pf2050, A Member O The Duf2666 Protein Family
Febs Lett. V. 586 1384 2012
PubMed-ID: 22616997 | Reference-DOI: 10.1016/J.FEBSLET.2012.04.004

Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	PF2050
	Organism Scientific	:	PYROCOCCUS FURIOSUS
	Organism Taxid	:	186497
	Strain	:	DSM 3638
	Synonym	:	PF2050 PROTEIN

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:179 , ASP A:186 , VAL A:190 , TYR A:224 , GLU A:228 , HOH A:485	BINDING SITE FOR RESIDUE MPD A 253

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:248
 aligned with Q8TZE5_PYRFU | Q8TZE5 from UniProtKB/TrEMBL  Length:252

    Alignment length:248
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241        
         Q8TZE5_PYRFU     2 IERILEFTAKHEEWIVGENVEDFTNENIAMFLSRVSNTVSSKIPGYLGEKIDVNGLLSIKIEGSLEEKLKALISPKVSRQIGRLVMEDDKKLKKLLVEVAKAVLTREILKNELPIEFPGGKIEGLKIQPRYEEDHINFTARYGSWIVVKRMIIDEKTPLLDIARLLASINETAVNKIKDFADVDDKKIVEYFGGFKKVKKEEEIKEIVQLFREFKGNEFEVRYAAREMLSKLGLKVDVPSKNLEKYLE 249
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee..eeeeee....hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh.....hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh........................eeeeeeee..eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.......hhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.......hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v68 A   2 IERILEFTAKHEEWIVGENVEDFTNENIAMFLSRVSNTVSSKIPGYLGEKIDVNGLLSIKIEGSLEEKLKALISPKVSRQIGRLVMEDDKKLKKLLVEVAKAVLTREILKNELPIEFPGGKIEGLKIQPRYEEDHINFTARYGSWIVVKRMIIDEKTPLLDIARLLASINETAVNKIKDFADVDDKKIVEYFGGFKKVKKEEEIKEIVQLFREFKGNEFEVRYAAREMLSKLGLKVDVPSKNLEKYLE 249
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

Visualization

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	Sites
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	Cis Peptide Bonds
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Still Images

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	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym./Biol. Unit PNG format \| Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
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Description