3V3L - JenaLib

Title :   CRYSTAL STRUCTURE OF HUMAN RNF146 WWE DOMAIN IN COMPLEX WITH ISO-ADPRIBOSE

Authors :   Z. Wang, Z. Cheng, W. Xu

Date :   13 Dec 11 (Deposition) - 15 Feb 12 (Release) - 15 Feb 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.65

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Z. Wang, G. A. Michaud, Z. Cheng, Y. Zhang, T. R. Hinds, E. Fan, F. Cong, W. Xu
Recognition Of The Iso-Adp-Ribose Moiety In Poly(Adp-Ribose By Wwe Domains Suggests A General Mechanism For Poly(Adp-Ribosyl)Ation-Dependent Ubiquitination.
Genes Dev. V. 26 235 2012
PubMed-ID: 22267412 | Reference-DOI: 10.1101/GAD.182618.111

Compounds

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE RNF146
	Chains	:	A, B
	EC Number	:	6.3.2.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	WWE DOMAIN RESIDUES 100-184
	Gene	:	RNF146
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	DACTYLIDIN, RING FINGER PROTEIN 146

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 6)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
2	V3L	2	Ligand/Ion	2'-O-(5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSYL)ADENOSINE 5'-(DIHYDROGEN PHOSPHATE)

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
2	V3L	1	Ligand/Ion	2'-O-(5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSYL)ADENOSINE 5'-(DIHYDROGEN PHOSPHATE)

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
2	V3L	1	Ligand/Ion	2'-O-(5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSYL)ADENOSINE 5'-(DIHYDROGEN PHOSPHATE)

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH A:3 , HOH A:7 , HOH A:9 , HOH A:10 , HOH A:14 , HOH A:15 , HOH A:16 , HOH A:22 , TYR A:107 , GLY A:109 , ARG A:110 , TRP A:114 , TYR A:116 , ILE A:139 , TYR A:144 , GLN A:153 , ARG A:161 , ARG A:163 , LYS A:175 , GLY A:179 , HOH A:184 , HOH A:190 , V3L B:1 , ARG B:110 , ARG B:161	BINDING SITE FOR RESIDUE V3L A 1
2	AC2	SOFTWARE	V3L A:1 , ARG A:110 , ARG A:161 , HOH A:184 , HOH A:207 , HOH B:4 , HOH B:5 , HOH B:6 , HOH B:11 , HOH B:25 , HOH B:31 , HOH B:34 , HOH B:96 , TYR B:107 , GLY B:109 , ARG B:110 , TRP B:114 , TYR B:116 , ILE B:139 , TYR B:144 , GLN B:153 , ARG B:161 , ARG B:163 , LYS B:175 , GLY B:179 , HOH B:188	BINDING SITE FOR RESIDUE V3L B 1

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (1, 2)

Asymmetric Unit (1, 2)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000368314	1a	ENSE00001446857	chr6:127587755-127588070	316	RN146_HUMAN	-	0	0	-	-
1.2a	ENST00000368314	2a	ENSE00002162468	chr6:127601376-127601485	110	RN146_HUMAN	1-1	1	0	-	-
1.5f	ENST00000368314	5f	ENSE00001446854	chr6:127607761-127609703	1943	RN146_HUMAN	1-359	359	2	A:101-183 B:99-183	83 85

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:83
 aligned with RN146_HUMAN | Q9NTX7 from UniProtKB/Swiss-Prot  Length:359

    Alignment length:83
                                   111       121       131       141       151       161       171       181   
          RN146_HUMAN   102 GEYAWYYEGRNGWWQYDERTSRELEDAFSKGKKNTEMLIAGFLYVADLENMVQYRRNEHGRRRKIKRDIIDIPKKGVAGLRLD 184
               SCOP domains ----------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eee.hhhhhhhhhhhhhh...eeeeee..eeeeee....eeee.......eeeeeee......ee..ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.5f  PDB: A:101-183 UniProt: 1-359 [INCOMPLETE]                               Transcript 1
                 3v3l A 101 GEYAWYYEGRNGWWQYDERTSRELEDAFSKGKKNTEmLIAGFLYVADLENmVQYRRNEHGRRRKIKRDIIDIPKKGVAGLRLD 183
                                   110       120       130      |140       150|      160       170       180   
                                                              137-MSE       151-MSE

Chain B from PDB  Type:PROTEIN  Length:85
 aligned with RN146_HUMAN | Q9NTX7 from UniProtKB/Swiss-Prot  Length:359

    Alignment length:85
                                   109       119       129       139       149       159       169       179     
          RN146_HUMAN   100 GNGEYAWYYEGRNGWWQYDERTSRELEDAFSKGKKNTEMLIAGFLYVADLENMVQYRRNEHGRRRKIKRDIIDIPKKGVAGLRLD 184
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee..eeee.hhhhhhhhhhhhhh...eeeeee..eeeeee....eeee.......eeeeeee......ee..ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.5f  PDB: B:99-183 UniProt: 1-359 [INCOMPLETE]                                  Transcript 1
                 3v3l B  99 GNGEYAWYYEGRNGWWQYDERTSRELEDAFSKGKKNTEmLIAGFLYVADLENmVQYRRNEHGRRRKIKRDIIDIPKKGVAGLRLD 183
                                   108       118       128       138       148  |    158       168       178     
                                                                137-MSE       151-MSE

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (16, 16)

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