3UY7 - JenaLib

Title :   DESIGNED PROTEIN KE59 R1 7/10H WITH G130S MUTATION

Authors :   O. Khersonsky, G. Kiss, D. Roethlisberger, O. Dym, S. Albeck, K. N. Houk D. S. Tawfik, Israel Structural Proteomics Center (Ispc)

Date :   06 Dec 11 (Deposition) - 27 Jun 12 (Release) - 11 Jul 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.45

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Structural Genomics, Israel Structural Proteomics Center, Ispc, Beta Barrel, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   O. Khersonsky, G. Kiss, D. Rothlisberger, O. Dym, S. Albeck, K. N. Houk D. Baker, D. S. Tawfik
Bridging The Gaps In Design Methodologies By Evolutionary Optimization Of The Stability And Proficiency Of Designed Kemp Eliminase Ke59.
Proc. Natl. Acad. Sci. Usa V. 109 10358 2012
PubMed-ID: 22685214 | Reference-DOI: 10.1073/PNAS.1121063109

Compounds

Molecule 1 - KEMP ELIMINASE KE59 R1 7/10H
	Chains	:	A, B
	EC Number	:	4.-.-.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Mutation	:	YES
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 7)

Asymmetric Unit (2, 7)

No.	Name	Count	Type	Full Name
1	NA	2	Ligand/Ion	SODIUM ION
2	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 3)

No.	Name	Count	Type	Full Name
1	NA	-1	Ligand/Ion	SODIUM ION
2	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	NA	-1	Ligand/Ion	SODIUM ION
2	SO4	2	Ligand/Ion	SULFATE ION

Sites (7, 7)

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:53 , ARG A:182 , SER A:211 , GLY A:212 , GLY A:233 , SER A:234 , HOH A:258 , HOH A:298 , HOH A:303	BINDING SITE FOR RESIDUE SO4 A 253
2	AC2	SOFTWARE	ARG A:36 , ARG A:43 , LYS B:42	BINDING SITE FOR RESIDUE SO4 A 254
3	AC3	SOFTWARE	SER A:32 , ARG A:34 , GLU A:155 , HOH A:345	BINDING SITE FOR RESIDUE SO4 A 255
4	AC4	SOFTWARE	ARG A:19 , GLU A:86 , SER A:92 , TYR A:93 , GLU B:241	BINDING SITE FOR RESIDUE NA A 256
5	AC5	SOFTWARE	ARG A:18 , LYS A:115 , GLU B:68	BINDING SITE FOR RESIDUE NA A 257
6	AC6	SOFTWARE	LYS B:53 , ARG B:182 , SER B:211 , GLY B:212 , GLY B:233 , SER B:234 , HOH B:261 , HOH B:298 , HOH B:301 , HOH B:316	BINDING SITE FOR RESIDUE SO4 B 253
7	AC7	SOFTWARE	ARG B:36 , ARG B:43	BINDING SITE FOR RESIDUE SO4 B 254

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh.............hhhhhhhhhhhh....eeeee............hhhhhhhhhhh...eeeee........hhhhhhhhhhhh...eeee....hhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhh...eeeee.........hhhhhhhhhhh.....eeeee....hhhhhhhhhhh...eeeehhhhhhh.hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uy7 A   2 PRYLKGALKDVVQLSLRRPSLRASRQRPIISLRERILEFNKRNITAIIAVYKRKSPSGLDVERDPIEYAKFMERYAVGLVILTEEKYFNGSYEDLRKIASSVSIPILMWDFIVKESQIDDAYNLGADTVSLIVKILTERELESLLEYARSYGMEPAIVINDEEDLDIALRIGARIIIISSRDLETLEINKENQRKLISMIPSNVVKVAASGISERNEIEELRKLGVNAFEIGSSLMRNPEKIKELIL 248
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241

Chain B from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh.............hhhhhhhhhhhh....eeeee............hhhhhhhhhh....eeeee........hhhhhhhhhhhh...eeee....hhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhh...eeeee.........hhhhhhhhhhh.....eeeee....hhhhhhhhhhh...eeeehhhhhhh.hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uy7 B   2 PRYLKGALKDVVQLSLRRPSLRASRQRPIISLRERILEFNKRNITAIIAVYKRKSPSGLDVERDPIEYAKFMERYAVGLVILTEEKYFNGSYEDLRKIASSVSIPILMWDFIVKESQIDDAYNLGADTVSLIVKILTERELESLLEYARSYGMEPAIVINDEEDLDIALRIGARIIIISSRDLETLEINKENQRKLISMIPSNVVKVAASGISERNEIEELRKLGVNAFEIGSSLMRNPEKIKELIL 248
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

3uxa	DESIGNED PROTEIN KE59 R1 7/10H
3uxd	DESIGNED PROTEIN KE59 R1 7/10H WITH DICHLOROBENZOTRIAZOLE (DBT)
3uy8	DESIGNED PROTEIN KE59 R5_11/5F
3uyc	DESIGNED PROTEIN KE59 R8_2/7A
3uz5	DESIGNED PROTEIN KE59 R13 3/11H
3uzj	DESIGNED PROTEIN KE59 R13 3/11H WITH BENZOTRIAZOLE

Description