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(-) Description

Title :  STRUCTURAL CHARACTERIZATION OF ADENO-ASSOCIATED VIRUS SEROTYPE 9
 
Authors :  M. A. Dimattia, H-J. Nam, K. Van Vliet, M. Mitchell, A. Mccall, A. Benne B. Gurda, R. Mckenna, M. Potter, Y. Sakai, B. J. Byrne, N. Muzyczka, G. A S. Zolotukhin, N. Olson, R. Sinkovitis, T. S. Baker, M. Agbandje-Mcke
Date :  03 Dec 11  (Deposition) - 02 May 12  (Release) - 06 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (60x)
Keywords :  Aav9, Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Dimattia, H. J. Nam, K. Van Vliet, M. Mitchell, A. Bennett, B. L. Gurda, R. Mckenna, N. H. Olson, R. S. Sinkovits, M. Potter, B. J. Byrne, G. Aslanidi, S. Zolotukhin, N. Muzyczka, T. S. Baker, M. Agbandje-Mckenna
Structural Insight Into The Unique Properties Of Adeno-Associated Virus Serotype 9.
J. Virol. V. 86 6947 2012
PubMed-ID: 22496238  |  Reference-DOI: 10.1128/JVI.07232-11

(-) Compounds

Molecule 1 - CAPSID PROTEIN VP1
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 219-736
    Gene: CAP
    Organism Scientific: ADENO-ASSOCIATED VIRUS 9
    Organism Taxid: 235455

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (60x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3UX1)

(-) Sites  (0, 0)

(no "Site" information available for 3UX1)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3UX1)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asn A:519 -Pro A:520

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3UX1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3UX1)

(-) Exons   (0, 0)

(no "Exon" information available for 3UX1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:518
 aligned with Q6JC40_9VIRU | Q6JC40 from UniProtKB/TrEMBL  Length:736

    Alignment length:518
                                   228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728        
         Q6JC40_9VIRU   219 DGVGSSSGNWHCDSQWLGDRVITTSTRTWALPTYNNHLYKQISNSTSGGSSNDNAYFGYSTPWGYFDFNRFHCHFSPRDWQRLINNNWGFRPKRLNFKLFNIQVKEVTDNNGVKTIANNLTSTVQVFTDSDYQLPYVLGSAHEGCLPPFPADVFMIPQYGYLTLNDGSQAVGRSSFYCLEYFPSQMLRTGNNFQFSYEFENVPFHSSYAHSQSLDRLMNPLIDQYLYYLSKTINGSGQNQQTLKFSVAGPSNMAVQGRNYIPGPSYRQQRVSTTVTQNNNSEFAWPGASSWALNGRNSLMNPGPAMASHKEGEDRFFPLSGSLIFGKQGTGRDNVDADKVMITNEEEIKTTNPVATESYGQVATNHQSAQAQAQTGWVQNQGILPGMVWQDRDVYLQGPIWAKIPHTDGNFHPSPLMGGFGMKHPPPQILIKNTPVPADPPTAFNKDKLNSFITQYSTGQVSVEIEWELQKENSKRWNPEIQYTSNYYKSNNVEFAVNTEGVYSEPRPIGTRYLTRNL 736
               SCOP domains d3ux1a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeee...eeeeeeeeeeee..hhhhh.eeee.......hhhhh.eeeeeeeeee...hhhhh.hhhhhhhhhhheeeeeeeeeeeeeeeeeeeeeeee..eeeeee....eeeeee........................eee..eeeee...............hhhhh..eeee....eeeeee......ee.eee................eeeeeee.......eeeeeee.hhhhhhhh....ee..ee...eee.hhhhh...........eeee..eeee................eee.....eee.........hhh.eee...hhhhhh........eeee...........eeee.ee.....ee............eee................eee......eeeee.....................eeeeeeeeeeeeeeeee..........................................eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ux1 A 219 DGVGSSSGNWHCDSQWLGDRVITTSTRTWALPTYNNHLYKQISNSTSGGSSNDNAYFGYSTPWGYFDFNRFHCHFSPRDWQRLINNNWGFRPKRLNFKLFNIQVKEVTDNNGVKTIANNLTSTVQVFTDSDYQLPYVLGSAHEGCLPPFPADVFMIPQYGYLTLNDGSQAVGRSSFYCLEYFPSQMLRTGNNFQFSYEFENVPFHSSYAHSQSLDRLMNPLIDQYLYYLSKTINGSGQNQQTLKFSVAGPSNMAVQGRNYIPGPSYRQQRVSTTVTQNNNSEFAWPGASSWALNGRNSLMNPGPAMASHKEGEDRFFPLSGSLIFGKQGTGRDNVDADKVMITNEEEIKTTNPVATESYGQVATNHQSAQAQAQTGWVQNQGILPGMVWQDRDVYLQGPIWAKIPHTDGNFHPSPLMGGFGMKHPPPQILIKNTPVPADPPTAFNKDKLNSFITQYSTGQVSVEIEWELQKENSKRWNPEIQYTSNYYKSNNVEFAVNTEGVYSEPRPIGTRYLTRNL 736
                                   228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3UX1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3UX1)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q6JC40_9VIRU | Q6JC40)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
cellular component
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.

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    Asn A:519 - Pro A:520   [ RasMol ]  
 
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 Related Entries

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