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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE HETERODIMERIC HUMAN SOLUBLE GUANYLATE CYCLASE 1.
 
Authors :  C. K. Allerston, G. Berridge, R. Chalk, C. D. O. Cooper, P. Savitsky, M. V C. H. Arrowsmith, J. Weigelt, A. Edwards, C. Bountra, F. Von Delft, O. Structural Genomics Consortium (Sgc)
Date :  30 Nov 11  (Deposition) - 28 Dec 11  (Release) - 10 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.08
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Nitric Oxide, Structural Genomics, Structural Genomics Consortium, Sgc, Cgmp Biosynthesis, Gtp Binding Metal-Binding, Nucleotide- Binding, Cystol, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. K. Allerston, F. Von Delft, O. Gileadi
Crystal Structures Of The Catalytic Domain Of Human Soluble Guanylate Cyclase.
Plos One V. 8 57644 2013
PubMed-ID: 23505436  |  Reference-DOI: 10.1371/JOURNAL.PONE.0057644

(-) Compounds

Molecule 1 - GUANYLATE CYCLASE SOLUBLE SUBUNIT ALPHA-3
    ChainsA, C
    EC Number4.6.1.2
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPNH-TRXT
    Expression System StrainBL21(DE3)-R3-CHAPERONES
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentSOLUBLE GUANYLATE CYCLASE ALPHA-1 CATALYTIC DOMAIN, UNP RESIDUES 468-690
    GeneGUC1A3, GUCSA3, GUCY1A1, GUCY1A3
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymGCS-ALPHA-3, GCS-ALPHA-1, SOLUBLE GUANYLATE CYCLASE LARGE SUBUNIT
 
Molecule 2 - GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-1
    ChainsB, D
    EC Number4.6.1.2
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPNIC-CTHF
    Expression System StrainBL21(DE3)-R3-CHAPERONES
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentSOLUBLE GUANYLATE CYCLASE BETA-1 CATALYTIC DOMAIN, UNP RESIDUES 408-619
    GeneGUCY1B3, GUC1B3, GUCSB3, GUCY1B1
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymGCS-BETA-1, GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-3, GCS- BETA-3, SOLUBLE GUANYLATE CYCLASE SMALL SUBUNIT

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric Unit (2, 7)
No.NameCountTypeFull Name
1EDO5Ligand/Ion1,2-ETHANEDIOL
2GOL2Ligand/IonGLYCEROL
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2GOL1Ligand/IonGLYCEROL
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2GOL1Ligand/IonGLYCEROL

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:510 , THR A:527 , GLY A:529 , ASP A:530 , ALA A:531 , HOH B:346BINDING SITE FOR RESIDUE EDO A 3
2AC2SOFTWAREHOH A:225 , LYS A:615 , HIS D:586 , TRP D:602BINDING SITE FOR RESIDUE EDO A 5
3AC3SOFTWAREHOH A:248 , VAL A:525 , GLU A:526 , CYS A:595 , LEU A:596 , VAL B:475 , ASP B:477BINDING SITE FOR RESIDUE GOL A 7
4AC4SOFTWAREPHE B:468 , GLY B:484 , LEU B:485 , PRO B:486 , GLU B:487BINDING SITE FOR RESIDUE EDO B 1
5AC5SOFTWAREHIS B:586 , ARG B:587 , GLY B:588 , PRO C:613BINDING SITE FOR RESIDUE EDO C 2
6AC6SOFTWAREHOH C:103 , HOH C:151 , THR C:527 , ILE C:528 , GLY C:529 , VAL D:472 , GLU D:473 , THR D:474 , MET D:480 , LEU D:542BINDING SITE FOR RESIDUE GOL C 4
7AC7SOFTWARETRP B:602 , HOH C:264 , VAL C:612 , LYS C:615BINDING SITE FOR RESIDUE EDO C 6

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3UVJ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu B:485 -Pro B:486
2Leu D:485 -Pro D:486

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3UVJ)

(-) PROSITE Motifs  (2, 8)

Asymmetric Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GUANYLATE_CYCLASE_2PS50125 Guanylate cyclase domain profile.GCYB1_HUMAN421-554
 
  2B:421-554
D:421-554
GCYA3_HUMAN481-608
 
  2A:481-608
C:481-608
2GUANYLATE_CYCLASE_1PS00452 Guanylate cyclase signature.GCYB1_HUMAN531-554
 
  2B:531-554
D:531-554
GCYA3_HUMAN585-608
 
  2A:585-608
C:585-608
Biological Unit 1 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GUANYLATE_CYCLASE_2PS50125 Guanylate cyclase domain profile.GCYB1_HUMAN421-554
 
  1B:421-554
-
GCYA3_HUMAN481-608
 
  1A:481-608
-
2GUANYLATE_CYCLASE_1PS00452 Guanylate cyclase signature.GCYB1_HUMAN531-554
 
  1B:531-554
-
GCYA3_HUMAN585-608
 
  1A:585-608
-
Biological Unit 2 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GUANYLATE_CYCLASE_2PS50125 Guanylate cyclase domain profile.GCYB1_HUMAN421-554
 
  1-
D:421-554
GCYA3_HUMAN481-608
 
  1-
C:481-608
2GUANYLATE_CYCLASE_1PS00452 Guanylate cyclase signature.GCYB1_HUMAN531-554
 
  1-
D:531-554
GCYA3_HUMAN585-608
 
  1-
C:585-608

(-) Exons   (0, 0)

(no "Exon" information available for 3UVJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:191
 aligned with GCYA3_HUMAN | Q02108 from UniProtKB/Swiss-Prot  Length:690

    Alignment length:192
                                   479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659  
          GCYA3_HUMAN   470 QVVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGDAYCVAGGLHKESDTHAVQIALMALKMMELSDEVMSPHGEPIKMRIGLHSGSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPRSREELPPNFPSEIPGICHFLDAYQ 661
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee......eeeee.......hhhhhhhhhhhhhhhhhh...........eeeeeeeeeeeeeee..-..eeeeehhhhhhhhhhhhh.....eeehhhhhhhhh....eeeee..................eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) -----------GUANYLATE_CYCLASE_2  PDB: A:481-608 UniProt: 481-608                                                                            ----------------------------------------------------- PROSITE (2)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------GUANYLATE_CYCLASE_1     ----------------------------------------------------- PROSITE (1)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3uvj A 470 QVVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGDAYCVAGGLHKESDTHAVQIALMALKMMELSDEVMSPHGEPIKMRIGLHSGSVFAGVVGV-MPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPRSREELPPNFPSEIPGICHFLDAYQ 661
                                   479       489       499       509       519       529       539       549       559       569       579       589 |     599       609       619       629       639       649       659  
                                                                                                                                                 589 |                                                                      
                                                                                                                                                   591                                                                      

Chain B from PDB  Type:PROTEIN  Length:196
 aligned with GCYB1_HUMAN | Q02153 from UniProtKB/Swiss-Prot  Length:619

    Alignment length:196
                                   422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602      
          GCYB1_HUMAN   413 PAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQVDGESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFLSRKN 608
               SCOP domains d3uvjb_ B: automated matches                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeee.hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.......eee......eeeee.......hhhhhhhhhhhhhhhhhh..ee..ee..eeeeeeeeeeeeeee.....eeeeehhhhhhhhhhhhh.....eeeehhhhhhhh........eeeeeeeee........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------GUANYLATE_CYCLASE_2  PDB: B:421-554 UniProt: 421-554                                                                                  ------------------------------------------------------ PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------------------------------------------------------------------------------------------------------------GUANYLATE_CYCLASE_1     ------------------------------------------------------ PROSITE (3)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uvj B 413 PAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVCDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQVDGESVQITIGIHTGEVVTGVIGQRMPRYSLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFLSRKN 608
                                   422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602      

Chain C from PDB  Type:PROTEIN  Length:191
 aligned with GCYA3_HUMAN | Q02108 from UniProtKB/Swiss-Prot  Length:690

    Alignment length:192
                                   479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659  
          GCYA3_HUMAN   470 QVVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGDAYCVAGGLHKESDTHAVQIALMALKMMELSDEVMSPHGEPIKMRIGLHSGSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPRSREELPPNFPSEIPGICHFLDAYQ 661
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee......eeeee..-....hhhhhhhhhhhhhhhhhh...........eeeeeeeeeeeeeee.....eeeeehhhhhhhhhhhhh.....eeehhhhhhhhh....eeeee..................eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) -----------GUANYLATE_CYCLASE_2  PDB: C:481-608 UniProt: 481-608                                                                            ----------------------------------------------------- PROSITE (2)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------GUANYLATE_CYCLASE_1     ----------------------------------------------------- PROSITE (1)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3uvj C 470 QVVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGDAYCVAGGL-KESDTHAVQIALMALKMMELSDEVMSPHGEPIKMRIGLHSGSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPRSREELPPNFPSEIPGICHFLDAYQ 661
                                   479       489       499       509       519       529        |-|      549       559       569       579       589       599       609       619       629       639       649       659  
                                                                                              538 |                                                                                                                         
                                                                                                540                                                                                                                         

Chain D from PDB  Type:PROTEIN  Length:196
 aligned with GCYB1_HUMAN | Q02153 from UniProtKB/Swiss-Prot  Length:619

    Alignment length:196
                                   421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601      
          GCYB1_HUMAN   412 VPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQVDGESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFLSRK 607
               SCOP domains d3uvjd_ D: automated matches                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeeee.hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.......eee......eeeee.......hhhhhhhhhhhhhhhhhh..ee..ee..eeeeeeeeeeeeeee.....eeeeehhhhhhhhhhhhh.....eeeehhhhhhhh........eeeeeeeee........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------GUANYLATE_CYCLASE_2  PDB: D:421-554 UniProt: 421-554                                                                                  ----------------------------------------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -----------------------------------------------------------------------------------------------------------------------GUANYLATE_CYCLASE_1     ----------------------------------------------------- PROSITE (3)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uvj D 412 VPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVCDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQVDGESVQITIGIHTGEVVTGVIGQRMPRYSLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFLSRK 607
                                   421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3UVJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3UVJ)

(-) Gene Ontology  (30, 47)

Asymmetric Unit(hide GO term definitions)
Chain A,C   (GCYA3_HUMAN | Q02108)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0004016    adenylate cyclase activity    Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate.
    GO:0004383    guanylate cyclase activity    Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0043167    ion binding    Interacting selectively and non-covalently with ions, charged atoms or groups of atoms.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016849    phosphorus-oxygen lyase activity    Catalysis of the cleavage of a phosphorus-oxygen bond by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046982    protein heterodimerization activity    Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
    GO:0004872    receptor activity    Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
biological process
    GO:0008015    blood circulation    The flow of blood through the body of an animal, enabling the transport of nutrients to the tissues and the removal of waste products.
    GO:0006182    cGMP biosynthetic process    The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate.
    GO:0009190    cyclic nucleotide biosynthetic process    The chemical reactions and pathways resulting in the formation of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue.
    GO:0035556    intracellular signal transduction    The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
    GO:0007263    nitric oxide mediated signal transduction    Any intracellular signal transduction in which the signal is passed on within the cell via nitric oxide (NO). Includes synthesis of nitric oxide, receptors/sensors for nitric oxide (such as soluble guanylyl cyclase/sGC) and downstream effectors that further transmit the signal within the cell. Nitric oxide transmits its downstream effects through either cyclic GMP (cGMP)-dependent or independent mechanisms.
    GO:0030828    positive regulation of cGMP biosynthetic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cGMP.
    GO:0008217    regulation of blood pressure    Any process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure.
    GO:0060087    relaxation of vascular smooth muscle    A negative regulation of smooth muscle contraction resulting in relaxation of vascular smooth muscle. The relaxation is mediated by a decrease in the phosphorylation state of myosin light chain. This can be achieved by removal of calcium from the cytoplasm to the sarcoplasmic reticulum lumen through the action of Ca2+ ATPases leading to a decrease myosin light chain kinase activity, and through calcium-independent pathways leading to a increase in myosin light chain phosphatase activity.
    GO:0052565    response to defense-related host nitric oxide production    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of nitric oxide produced as part of the defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0009635    response to herbicide    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a herbicide stimulus. Herbicides are chemicals used to kill or control the growth of plants.
    GO:0014070    response to organic cyclic compound    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0008074    guanylate cyclase complex, soluble    Complex that possesses guanylate cyclase activity and is not bound to a membrane.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

Chain B,D   (GCYB1_HUMAN | Q02153)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0004016    adenylate cyclase activity    Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate.
    GO:0004383    guanylate cyclase activity    Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016849    phosphorus-oxygen lyase activity    Catalysis of the cleavage of a phosphorus-oxygen bond by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004872    receptor activity    Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
biological process
    GO:0008015    blood circulation    The flow of blood through the body of an animal, enabling the transport of nutrients to the tissues and the removal of waste products.
    GO:0006182    cGMP biosynthetic process    The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate.
    GO:0071732    cellular response to nitric oxide    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus.
    GO:0009190    cyclic nucleotide biosynthetic process    The chemical reactions and pathways resulting in the formation of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue.
    GO:0035556    intracellular signal transduction    The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
    GO:0007263    nitric oxide mediated signal transduction    Any intracellular signal transduction in which the signal is passed on within the cell via nitric oxide (NO). Includes synthesis of nitric oxide, receptors/sensors for nitric oxide (such as soluble guanylyl cyclase/sGC) and downstream effectors that further transmit the signal within the cell. Nitric oxide transmits its downstream effects through either cyclic GMP (cGMP)-dependent or independent mechanisms.
    GO:0038060    nitric oxide-cGMP-mediated signaling pathway    Any intracellular signal transduction in which the signal is passed on within the cell by nitric oxide (NO) activating soluble guanylyl cyclase (sGC). Includes synthesis of nitric oxide, guanylyl cyclase activity, and downstream effectors that further transmit the signal within the cell following activation by cGMP.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0008074    guanylate cyclase complex, soluble    Complex that possesses guanylate cyclase activity and is not bound to a membrane.
    GO:0043231    intracellular membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        GCYA3_HUMAN | Q021084ni2
        GCYB1_HUMAN | Q021532wz1 4ni2

(-) Related Entries Specified in the PDB File

2wz1