3UV1 - JenaLib

Title :   CRYSTAL STRUCTURE A MAJOR ALLERGEN FROM DUST MITE

Authors :   K. W. Tan, T. Kumar, F. T. Chew, Y. K. Mok

Date :   29 Nov 11 (Deposition) - 17 Oct 12 (Release) - 17 Oct 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A,B

Keywords :   Super-Roll, Allergen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. W. Tan, C. Jobichen, T. C. Ong, Y. F. Gao, Y. S. Tiong, K. N. Wong, F. T. Chew, J. Sivaraman, Y. K. Mok
Crystal Structure Of Der F 7, A Dust Mite Allergen From Dermatophagoides Farinae.
Plos One V. 7 44850 2012
PubMed-ID: 22970319 | Reference-DOI: 10.1371/JOURNAL.PONE.0044850

Compounds

Molecule 1 - DER F 7 ALLERGEN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 18-213
	Organism Common	:	AMERICAN HOUSE DUST MITE
	Organism Scientific	:	DERMATOPHAGOIDES FARINAE
	Organism Taxid	:	6954

Structural Features

Chains, Units

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (1, 12)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:190
 aligned with A1KXH4_DERFA | A1KXH4 from UniProtKB/TrEMBL  Length:213

    Alignment length:190
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212
         A1KXH4_DERFA    23 DKITEEINKAIDDAIAAIEQSETIDPMKVPDHADKFERHVGILDFKGELAMRNIEARGLKQMKRQGDANVKGEEGIVKAHLLIGVHDDIVSMEYDLAYKLGDLHPTTHVISDIQDFVVALSLEIPDEGNITMTSFEVRQFANVVNHIGGLSILDPIFGVLSDVLTAIFQDTVRKEMTKVLAPAFKRELEK 212
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh......eee..eeeeeeee....eeeeeeeeeeeeeehhh.eee....eeeee..eeeeeeeeee....eeeeeeeeee......eeeeeeeee..eeeeeeeee.....eeeeeee....eeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uv1 A   6 DKITEEINKAIDDAIAAIEQSETIDPmKVPDHADKFERHVGILDFKGELAmRNIEARGLKQmKRQGDANVKGEEGIVKAHLLIGVHDDIVSmEYDLAYKLGDLHPTTHVISDIQDFVVALSLEIPDEGNITmTSFEVRQFANVVNHIGGLSILDPIFGVLSDVLTAIFQDTVRKEmTKVLAPAFKRELEK 195
                                    15        25      | 35        45        55|       65 |      75        85        95 |     105       115       125       135 |     145       155       165       175     | 185       195
                                                     32-MSE                  56-MSE     67-MSE                        97-MSE                                 137-MSE                                     181-MSE

Chain A from PDB  Type:PROTEIN  Length:190
 aligned with ALL7_DERFA | Q26456 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:190
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212
           ALL7_DERFA    23 DKITEEINKAIDDAIAAIEQSETIDPMKVPDHADKFERHVGIVDFKGELAMRNIEARGLKQMKRQGDANVKGEEGIVKAHLLIGVHDDIVSMEYDLAYKLGDLHPTTHVISDIQDFVVALSLEISDEGNITMTSFEVRQFANVVNHIGGLSILDPIFGVLSDVLTAIFQDTVRKEMTKVLAPAFKRELEK 212
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh......eee..eeeeeeee....eeeeeeeeeeeeeehhh.eee....eeeee..eeeeeeeeee....eeeeeeeeee......eeeeeeeee..eeeeeeeee.....eeeeeee....eeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uv1 A   6 DKITEEINKAIDDAIAAIEQSETIDPmKVPDHADKFERHVGILDFKGELAmRNIEARGLKQmKRQGDANVKGEEGIVKAHLLIGVHDDIVSmEYDLAYKLGDLHPTTHVISDIQDFVVALSLEIPDEGNITmTSFEVRQFANVVNHIGGLSILDPIFGVLSDVLTAIFQDTVRKEmTKVLAPAFKRELEK 195
                                    15        25      | 35        45        55|       65 |      75        85        95 |     105       115       125       135 |     145       155       165       175     | 185       195
                                                     32-MSE                  56-MSE     67-MSE                        97-MSE                                 137-MSE                                     181-MSE

Chain B from PDB  Type:PROTEIN  Length:190
 aligned with A1KXH4_DERFA | A1KXH4 from UniProtKB/TrEMBL  Length:213

    Alignment length:190
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212
         A1KXH4_DERFA    23 DKITEEINKAIDDAIAAIEQSETIDPMKVPDHADKFERHVGILDFKGELAMRNIEARGLKQMKRQGDANVKGEEGIVKAHLLIGVHDDIVSMEYDLAYKLGDLHPTTHVISDIQDFVVALSLEIPDEGNITMTSFEVRQFANVVNHIGGLSILDPIFGVLSDVLTAIFQDTVRKEMTKVLAPAFKRELEK 212
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh.....eee..eeeeeeeee..eeeeeeeeeeeeeeehhh.eee....eeee...eeeeeeeeee....eeeeeeeeee......eeeeeeee...eeeeeeeee.....eeeeeee.....eeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uv1 B   6 DKITEEINKAIDDAIAAIEQSETIDPmKVPDHADKFERHVGILDFKGELAmRNIEARGLKQmKRQGDANVKGEEGIVKAHLLIGVHDDIVSmEYDLAYKLGDLHPTTHVISDIQDFVVALSLEIPDEGNITmTSFEVRQFANVVNHIGGLSILDPIFGVLSDVLTAIFQDTVRKEmTKVLAPAFKRELEK 195
                                    15        25      | 35        45        55|       65 |      75        85        95 |     105       115       125       135 |     145       155       165       175     | 185       195
                                                     32-MSE                  56-MSE     67-MSE                        97-MSE                                 137-MSE                                     181-MSE

Chain B from PDB  Type:PROTEIN  Length:190
 aligned with ALL7_DERFA | Q26456 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:190
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212
           ALL7_DERFA    23 DKITEEINKAIDDAIAAIEQSETIDPMKVPDHADKFERHVGIVDFKGELAMRNIEARGLKQMKRQGDANVKGEEGIVKAHLLIGVHDDIVSMEYDLAYKLGDLHPTTHVISDIQDFVVALSLEISDEGNITMTSFEVRQFANVVNHIGGLSILDPIFGVLSDVLTAIFQDTVRKEMTKVLAPAFKRELEK 212
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh.....eee..eeeeeeeee..eeeeeeeeeeeeeeehhh.eee....eeee...eeeeeeeeee....eeeeeeeeee......eeeeeeee...eeeeeeeee.....eeeeeee.....eeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uv1 B   6 DKITEEINKAIDDAIAAIEQSETIDPmKVPDHADKFERHVGILDFKGELAmRNIEARGLKQmKRQGDANVKGEEGIVKAHLLIGVHDDIVSmEYDLAYKLGDLHPTTHVISDIQDFVVALSLEIPDEGNITmTSFEVRQFANVVNHIGGLSILDPIFGVLSDVLTAIFQDTVRKEmTKVLAPAFKRELEK 195
                                    15        25      | 35        45        55|       65 |      75        85        95 |     105       115       125       135 |     145       155       165       175     | 185       195
                                                     32-MSE                  56-MSE     67-MSE                        97-MSE                                 137-MSE                                     181-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (1, 1)

Asymmetric/Biological Unit(show GO term definitions)

Chain A,B (A1KXH4_DERFA | A1KXH4)

Chain A,B (ALL7_DERFA | Q26456)

cellular component
	GO:0005576		extracellular region

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	Cis Peptide Bonds
		Asp A:30 - Pro A:31	[ RasMol ]
		Asp B:30 - Pro B:31	[ RasMol ]
		Glu A:132 - Gly A:133	[ RasMol ]
		Glu B:132 - Gly B:133	[ RasMol ]

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Description