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(-) Description

Title :  SUBSTRATE-BOUND CRYSTAL STRUCTURE OF 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE FROM BURKHOLDERIA PSEUDOMALLEI
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  15 Nov 11  (Deposition) - 30 Nov 11  (Release) - 09 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Ssgcid, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Baugh, L. A. Gallagher, R. Patrapuvich, M. C. Clifton, A. S. Gardberg, T. E. Edwards, B. Armour, D. W. Begley, S. H. Dieterich, D. M. Dranow, J. Abendroth, J. W. Fairman, D. Fox, B. L. Staker, I. Phan, A. Gillespie, R. Choi, S. Nakazawa-Hewitt, M. T. Nguyen, A. Napuli, L. Barrett, G. W. Buchko, R. Stacy, P. J. Myler, L. J. Stewart, C. Manoil W. C. Van Voorhis
Combining Functional And Structural Genomics To Sample The Essential Burkholderia Structome.
Plos One V. 8 53851 2013
PubMed-ID: 23382856  |  Reference-DOI: 10.1371/JOURNAL.PONE.0053851

(-) Compounds

Molecule 1 - 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE 2
    Chains: A, B, C, D
    EC Number: 2.5.1.55
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: AVA0421
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: KDSA, KDSA2, BURPS1710B_3264
    Organism Scientific: BURKHOLDERIA PSEUDOMALLEI
    Organism Taxid: 320372
    Strain: 1710B
    Synonym: 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHASE 2, KDO-8-PHOSPHATE SYNTHASE 2, PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE 2

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 19)

Asymmetric/Biological Unit (4, 19)
No.NameCountTypeFull Name
1A5P4Ligand/IonARABINOSE-5-PHOSPHATE
2EDO7Ligand/Ion1,2-ETHANEDIOL
3KD04Ligand/Ion3-DEOXY-8-O-PHOSPHONO-D-MANNO-OCT-2-ULOSONIC ACID
4PEP4Ligand/IonPHOSPHOENOLPYRUVATE

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:24 , LYS A:58 , ASN A:60 , ARG A:61 , SER A:62 , HIS A:200 , GLN A:203 , ARG A:205 , ALA A:211 , SER A:212 , ASP A:248 , EDO A:282 , PEP A:304 , HOH A:358 , HOH A:378 , ARG C:118BINDING SITE FOR RESIDUE A5P A 301
02AC2SOFTWARELYS A:53 , SER A:55 , LYS A:58 , ASP A:93 , GLN A:111 , PRO A:113 , ALA A:114 , LYS A:136 , ARG A:166 , HIS A:200 , PHE A:235 , EDO A:282 , HOH A:293 , A5P A:301 , HOH A:356 , HOH A:373BINDING SITE FOR RESIDUE PEP A 304
03AC3SOFTWAREASN A:24 , LYS A:53 , SER A:55 , LYS A:58 , ASN A:60 , ARG A:61 , SER A:62 , ASP A:93 , GLN A:111 , LYS A:136 , HIS A:200 , GLN A:203 , ARG A:205 , ALA A:211 , SER A:212 , PHE A:235 , ASP A:248 , EDO A:282 , HOH A:358 , HOH A:378 , ARG C:118BINDING SITE FOR RESIDUE KD0 A 306
04AC4SOFTWAREASN A:13 , ARG A:183 , VAL A:194 , GLY A:230BINDING SITE FOR RESIDUE EDO A 316
05AC5SOFTWAREPHE A:115 , GLN A:139 , ARG A:166 , GLN A:203 , ARG A:205 , A5P A:301 , PEP A:304 , KD0 A:306 , HOH A:373 , HOH A:767 , ARG C:118BINDING SITE FOR RESIDUE EDO A 282
06AC6SOFTWAREASN B:24 , LYS B:58 , ASN B:60 , ARG B:61 , SER B:62 , HIS B:200 , GLN B:203 , ARG B:205 , ALA B:211 , SER B:212 , ASP B:248 , EDO B:282 , PEP B:304 , HOH B:311 , HOH B:621 , ARG D:118BINDING SITE FOR RESIDUE A5P B 301
07AC7SOFTWARELYS B:53 , SER B:55 , LYS B:58 , ASP B:93 , GLN B:111 , PRO B:113 , ALA B:114 , LYS B:136 , ARG B:166 , HIS B:200 , PHE B:235 , A5P B:301 , HOH B:314 , HOH B:317 , HOH B:740BINDING SITE FOR RESIDUE PEP B 304
08AC8SOFTWAREASN B:24 , LYS B:53 , SER B:55 , LYS B:58 , ASN B:60 , ARG B:61 , SER B:62 , LYS B:136 , HIS B:200 , GLN B:203 , ARG B:205 , ALA B:211 , SER B:212 , PHE B:235 , GLU B:237 , CYS B:247 , ASP B:248 , EDO B:282 , HOH B:311 , HOH B:621 , ARG D:118BINDING SITE FOR RESIDUE KD0 B 306
09AC9SOFTWAREASN B:13 , PHE B:182 , VAL B:194 , GLY B:230BINDING SITE FOR RESIDUE EDO B 316
10BC1SOFTWAREPHE B:115 , GLN B:139 , ARG B:166 , GLN B:203 , ARG B:205 , A5P B:301 , KD0 B:306 , HOH B:740 , HOH B:754 , HOH B:755 , ARG D:118BINDING SITE FOR RESIDUE EDO B 282
11BC2SOFTWAREARG A:118 , ASN C:24 , LYS C:58 , ASN C:60 , ARG C:61 , SER C:62 , HIS C:200 , GLN C:203 , ARG C:205 , ALA C:211 , SER C:212 , ASP C:248 , EDO C:282 , PEP C:304 , HOH C:341 , HOH C:369BINDING SITE FOR RESIDUE A5P C 301
12BC3SOFTWARELYS C:53 , SER C:55 , LYS C:58 , ASP C:93 , GLN C:111 , PRO C:113 , ALA C:114 , LYS C:136 , ARG C:166 , HIS C:200 , PHE C:235 , EDO C:282 , HOH C:293 , A5P C:301 , HOH C:388 , HOH C:416BINDING SITE FOR RESIDUE PEP C 304
13BC4SOFTWAREARG A:118 , ASN C:24 , LYS C:53 , SER C:55 , LYS C:58 , ASN C:60 , ARG C:61 , SER C:62 , GLN C:111 , LYS C:136 , HIS C:200 , GLN C:203 , ARG C:205 , ALA C:211 , SER C:212 , PHE C:235 , ASP C:248 , EDO C:282 , HOH C:341 , HOH C:369BINDING SITE FOR RESIDUE KD0 C 306
14BC5SOFTWAREASN C:13 , VAL C:229 , GLY C:230 , ILE C:231BINDING SITE FOR RESIDUE EDO C 316
15BC6SOFTWAREARG A:118 , PHE C:115 , GLN C:139 , ARG C:166 , GLN C:203 , ARG C:205 , A5P C:301 , PEP C:304 , KD0 C:306BINDING SITE FOR RESIDUE EDO C 282
16BC7SOFTWAREARG B:118 , ASN D:24 , LYS D:58 , ASN D:60 , ARG D:61 , SER D:62 , HIS D:200 , GLN D:203 , ARG D:205 , ALA D:211 , SER D:212 , ASP D:248 , PEP D:304 , HOH D:606 , HOH D:733 , HOH D:762BINDING SITE FOR RESIDUE A5P D 301
17BC8SOFTWARELYS D:53 , SER D:55 , LYS D:58 , ASP D:93 , GLN D:111 , PRO D:113 , ALA D:114 , LYS D:136 , ARG D:166 , PHE D:235 , HOH D:294 , A5P D:301 , HOH D:305 , HOH D:322BINDING SITE FOR RESIDUE PEP D 304
18BC9SOFTWAREARG B:118 , ASN D:24 , LYS D:53 , SER D:55 , LYS D:58 , ASN D:60 , ARG D:61 , SER D:62 , GLN D:111 , LYS D:136 , HIS D:200 , GLN D:203 , ARG D:205 , ALA D:211 , SER D:212 , PHE D:235 , GLU D:237 , CYS D:247 , ASP D:248 , HOH D:606 , HOH D:733BINDING SITE FOR RESIDUE KD0 D 306
19CC1SOFTWAREASN D:13 , PHE D:182 , VAL D:194 , GLY D:230BINDING SITE FOR RESIDUE EDO D 316

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3UND)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3UND)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3UND)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3UND)

(-) Exons   (0, 0)

(no "Exon" information available for 3UND)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:283
 aligned with Q3JP68_BURP1 | Q3JP68 from UniProtKB/TrEMBL  Length:281

    Alignment length:283
                              1                                                                                                                                                                                                                                                                                        
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278   
         Q3JP68_BURP1     - --MNVAISPGVTAGNSLPFVLFGGINVLESLDFTLDVCGEYVAVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLKIFAEVKARFGVPVITDVHEAEQAAPVAEIADVLQVPAFLARQTDLVVAIAKAGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHPDPDRARCDGPSALPLHQLEGLLSQMKAIDDLVKRMPALEIR 281
               SCOP domains d3unda_ A: automated matches                                                                                                                                                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..eee......eeeeeeee..hhhhhhhhhhhhhhhhhhhh..eeeeee...............hhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhh.eeeehhhhh.hhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhh....eeeee..ee.....ee...hhhhhhhhh.....eeeehhhhhee........ee...hhhhhhhhhhhhh..eeeeeee.hhhhh..hhhhhee..hhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3und A  -1 GSMNVAISPGVTAGNSLPFVLFGGINVLESLDFTLDVCGEYVAVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLKIFAEVKARFGVPVITDVHEAEQAAPVAEIADVLQVPAFLARQTDLVVAIAKAGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHPDPDRARCDGPSALPLHQLEGLLSQMKAIDDLVKRMPALEIR 281
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278   


Chain B from PDB  Type:PROTEIN  Length:284
 aligned with Q3JP68_BURP1 | Q3JP68 from UniProtKB/TrEMBL  Length:281

    Alignment length:284
                               1                                                                                                                                                                                                                                                                                        
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277    
         Q3JP68_BURP1     - ---MNVAISPGVTAGNSLPFVLFGGINVLESLDFTLDVCGEYVAVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLKIFAEVKARFGVPVITDVHEAEQAAPVAEIADVLQVPAFLARQTDLVVAIAKAGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHPDPDRARCDGPSALPLHQLEGLLSQMKAIDDLVKRMPALEIR 281
               SCOP domains d3undb_ B: automated matches                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee..eee......eeeeeeee..hhhhhhhhhhhhhhhhhhhh..eeeeee...............hhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhh.eeeehhhhh.hhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhh....eeeee..ee.....ee...hhhhhhhhh.....eeeehhhhhee........ee...hhhhhhhhhhhhh..eeeeeee.hhhhh..hhhhhee..hhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3und B  -2 PGSMNVAISPGVTAGNSLPFVLFGGINVLESLDFTLDVCGEYVAVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLKIFAEVKARFGVPVITDVHEAEQAAPVAEIADVLQVPAFLARQTDLVVAIAKAGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHPDPDRARCDGPSALPLHQLEGLLSQMKAIDDLVKRMPALEIR 281
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277    


Chain C from PDB  Type:PROTEIN  Length:282
 aligned with Q3JP68_BURP1 | Q3JP68 from UniProtKB/TrEMBL  Length:281

    Alignment length:282
                             1                                                                                                                                                                                                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279  
         Q3JP68_BURP1     - -MNVAISPGVTAGNSLPFVLFGGINVLESLDFTLDVCGEYVAVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLKIFAEVKARFGVPVITDVHEAEQAAPVAEIADVLQVPAFLARQTDLVVAIAKAGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHPDPDRARCDGPSALPLHQLEGLLSQMKAIDDLVKRMPALEIR 281
               SCOP domains d3undc_ C: automated matches                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee..eee......eeeeeeee..hhhhhhhhhhhhhhhhhhhh..eeeeee...............hhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhh.eeeehhhhh.hhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhh....eeeee..ee.....ee...hhhhhhhhhh....eeeehhhhh............hhhhhhhhhhhhhhhh..eeeeeee.hhhhh..hhhhhee..hhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3und C   0 SMNVAISPGVTAGNSLPFVLFGGINVLESLDFTLDVCGEYVAVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLKIFAEVKARFGVPVITDVHEAEQAAPVAEIADVLQVPAFLARQTDLVVAIAKAGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHPDPDRARCDGPSALPLHQLEGLLSQMKAIDDLVKRMPALEIR 281
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279  


Chain D from PDB  Type:PROTEIN  Length:284
 aligned with Q3JP68_BURP1 | Q3JP68 from UniProtKB/TrEMBL  Length:281

    Alignment length:284
                               1                                                                                                                                                                                                                                                                                        
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277    
         Q3JP68_BURP1     - ---MNVAISPGVTAGNSLPFVLFGGINVLESLDFTLDVCGEYVAVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLKIFAEVKARFGVPVITDVHEAEQAAPVAEIADVLQVPAFLARQTDLVVAIAKAGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHPDPDRARCDGPSALPLHQLEGLLSQMKAIDDLVKRMPALEIR 281
               SCOP domains d3undd_ D: automated matches                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee..eee......eeeeeeee..hhhhhhhhhhhhhhhhhhhh..eeeeee...............hhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhh.eeeehhhhh.hhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhh....eeeee..ee.....ee...hhhhhhhhhh....eeeehhhhhee........ee...hhhhhhhhhhhhh..eeeeeee.hhhhh..hhhhhee..hhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3und D  -2 PGSMNVAISPGVTAGNSLPFVLFGGINVLESLDFTLDVCGEYVAVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLKIFAEVKARFGVPVITDVHEAEQAAPVAEIADVLQVPAFLARQTDLVVAIAKAGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHPDPDRARCDGPSALPLHQLEGLLSQMKAIDDLVKRMPALEIR 281
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3UND)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3UND)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (Q3JP68_BURP1 | Q3JP68)
molecular function
    GO:0008676    3-deoxy-8-phosphooctulonate synthase activity    Catalysis of the reaction: D-arabinose 5-phosphate + H(2)O + phosphoenolpyruvate = 8-phospho-3-deoxy-D-manno-oct-2-ulosonate + 2 H(+) + phosphate.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:0019294    keto-3-deoxy-D-manno-octulosonic acid biosynthetic process    The chemical reactions and pathways resulting in the formation of keto-3-deoxy-D-manno-octulosonic acid, an acidic sugar present in lipopolysaccharides of the outer membranes of some Gram-negative bacteria.
    GO:0009103    lipopolysaccharide biosynthetic process    The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  Q3JP68_BURP1 | Q3JP68
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    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
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  2.5.1.55
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    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
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  Q3JP68_BURP1 | Q3JP68
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q3JP68_BURP1 | Q3JP68: 3sz8 3tmq

(-) Related Entries Specified in the PDB File

3sz8 UNLIGANDED RELATED ID: BUPSA.00102.A RELATED DB: TARGETDB
3tmq BOUND TO ONE REACTANT: D-ARABINOSE-5-PHOSPHATE