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(-) Description

Title :  CRYSTAL STRUCTURE OF A PROBABLE FAD-BINDING, PUTATIVE UNCHARACTERIZED PROTEIN FROM BRUCELLA MELITENSIS, APO FORM
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  11 Oct 11  (Deposition) - 19 Oct 11  (Release) - 19 Oct 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Ssgcid, Seattle Structural Genomics Center For Infectious Disease, Fmn-Binding Protein, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Seattle Structual Genomics Center For Infectious Disease (Ssgcid), A. Gardberg, J. Abendroth, D. Fox Iii, B. Staker, L. Stewar
Crystal Structure Of A Probable Fad-Binding, Putative Uncharacterized Protein From Brucella Melitensis, Apo Form
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: AVA0421
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BAB1_1392
    Organism Scientific: BRUCELLA MELITENSIS BIOVAR ABORTUS
    Organism Taxid: 359391
    Strain: 2308

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO2Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:79 , SER A:139 , HIS A:141BINDING SITE FOR RESIDUE EDO A 145
2AC2SOFTWARETYR A:46 , ILE A:89BINDING SITE FOR RESIDUE CL A 146
3AC3SOFTWARETHR A:37BINDING SITE FOR RESIDUE CL A 147

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3U5W)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3U5W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3U5W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3U5W)

(-) Exons   (0, 0)

(no "Exon" information available for 3U5W)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:126
 aligned with Q2YQN9_BRUA2 | Q2YQN9 from UniProtKB/TrEMBL  Length:144

    Alignment length:143
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141   
         Q2YQN9_BRUA2     2 LITEMSDYDIREMIQHKHVGRLGYVVDDRPIIVPMTFRFSGGSFYSFTTDGQKTNAMRKNDAICILFDQIESQTKWRTVLVQGRYREIAREDEEEAIVRIMANEPTWWEPAYTKTITKEGTARALKPVFFRVDIEKLSGHQAE 144
               SCOP domains d3u5wa_ A: automated matches                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.hhhhhhhhhhhh.eeeeeeee..eeeeeeee.eee..eeeeee.hhhhhhhhhhh.eeeeeeeee.....eeeeeeeeeeee.hhhhhhhhhhhhhh......-----------------..eeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3u5w A   2 LITEMSDYDIREMIQHKHVGRLGYVVDDRPIIVPMTFRFSGGSFYSFTTDGQKTNAMRKNDAICILFDQIESQTKWRTVLVQGRYREIAREDEEEAIVRIMANEPTWW-----------------KPVFFRVDIEKLSGHQAE 144
                                    11        21        31        41        51        61        71        81        91       101       | -         -     | 131       141   
                                                                                                                                     109               127
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3U5W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3U5W)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q2YQN9_BRUA2 | Q2YQN9)
molecular function
    GO:0010181    FMN binding    Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q2YQN9_BRUA2 | Q2YQN9: 3u0i

(-) Related Entries Specified in the PDB File

3u0i CHES-BOUND FORM RELATED ID: BRABA.17620.A RELATED DB: TARGETDB