Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE OXIDOREDUCTASE FROM SINORHIZOBIUM MELILOTI 1021
 
Authors :  R. Agarwal, S. Chamala, B. Evans, R. Foti, A. Gizzi, B. Hillerich, A. Kar J. Lafleur, R. Seidel, G. Villigas, W. Zencheck, S. C. Almo, S. Swamina York Structural Genomics Research Consortium (Nysgrc)
Date :  06 Oct 11  (Deposition) - 19 Oct 11  (Release) - 19 Oct 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.79
Chains :  Asym. Unit :  A,D,G,J,M
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  G,J  (1x)
Biol. Unit 3:  M  (2x)
Keywords :  Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Oxidoreductase, Nysgrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Agarwal, S. C. Almo, S. Swaminathan
Crystal Structure Of A Putative Oxidoreductase From Sinorhizobium Meliloti 1021
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - OXIDOREDUCTASE
    Chains: A, D, G, J, M
    EC Number: 1.-.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)RIPL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: PUTATIVE OXIDOREDUCTASE
    Gene: R00114, SMC04138
    Mutation: YES
    Organism Common: ENSIFER MELILOTI
    Organism Scientific: SINORHIZOBIUM MELILOTI
    Organism Taxid: 266834
    Strain: 1021

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ADGJM
Biological Unit 1 (1x): AD   
Biological Unit 2 (1x):   GJ 
Biological Unit 3 (2x):     M

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 32)

Asymmetric Unit (2, 32)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2MSE30Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 13)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 13)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 12)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:36 , ASN A:37 , ARG A:182 , ARG A:186 , PRO A:187BINDING SITE FOR RESIDUE ACT A 362
2AC2SOFTWAREASN G:37 , ARG G:182 , THR G:185 , ARG G:186BINDING SITE FOR RESIDUE ACT G 362

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3U3X)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Lys A:119 -Pro A:120
2Gly A:296 -Asn A:297
3Lys D:119 -Pro D:120
4Arg D:183 -Glu D:184
5Lys G:119 -Pro G:120
6Leu G:290 -Ala G:291
7Gly G:296 -Asn G:297
8Lys J:119 -Pro J:120
9Gly J:296 -Asn J:297
10Lys M:119 -Pro M:120
11Leu M:290 -Ala M:291
12Gly M:296 -Asn M:297

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3U3X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3U3X)

(-) Exons   (0, 0)

(no "Exon" information available for 3U3X)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:330
 aligned with Q92T66_RHIME | Q92T66 from UniProtKB/TrEMBL  Length:338

    Alignment length:330
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332
         Q92T66_RHIME     3 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFSILYSEHFESPATVKAGELVAAGAIGEVVHIVGLGPHRLRRETRPDWFFRRADYGGILTDIASHQCEQFLFFTGVNDATVLSASVGNQSVPDAPELQDTGSIHLSTGRTTGMIHVNWLTPEGMPTWGDGRLFIVGTSGTIEVRKTVDLAGREGGNHLFLADRNGVEHIDCSRVDLPFGRQFLADIRDRTETAMPQERCFKAMELALQAQAIAE 332
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee.....hhhhhhhhhhhh..eeeeee..hhhhhhhhhhhh....ee.hhhhhhh.....eeee..hhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhh.....eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee............eeeeeee....eeeeeee.............eeeeee...eeeee............eeeee....eeeee......hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3u3x A  26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAELAIRAmQHGKDVLVDKPGmTSFDQLAKLRRVQAETGRIFSILYSEHFESPATVKAGELVAAGAIGEVVHIVGLGPHRLRRETRPDWFFRRADYGGILTDIASHQCEQFLFFTGVNDATVLSASVGNQSVPDAPELQDTGSIHLSTGRTTGmIHVNWLTPEGmPTWGDGRLFIVGTSGTIEVRKTVDLAGREGGNHLFLADRNGVEHIDCSRVDLPFGRQFLADIRDRTETAmPQERCFKAmELALQAQAIAE 355
                                    35        45        55        65        75        85        95       105   |   115      |125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355
                                                                                                             109-MSE      122-MSE                                                                                                                             254-MSE    265-MSE                                                               335-MSE  344-MSE       


Chain D from PDB  Type:PROTEIN  Length:330
 aligned with Q92T66_RHIME | Q92T66 from UniProtKB/TrEMBL  Length:338

    Alignment length:330
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332
         Q92T66_RHIME     3 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFSILYSEHFESPATVKAGELVAAGAIGEVVHIVGLGPHRLRRETRPDWFFRRADYGGILTDIASHQCEQFLFFTGVNDATVLSASVGNQSVPDAPELQDTGSIHLSTGRTTGMIHVNWLTPEGMPTWGDGRLFIVGTSGTIEVRKTVDLAGREGGNHLFLADRNGVEHIDCSRVDLPFGRQFLADIRDRTETAMPQERCFKAMELALQAQAIAE 332
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee..hhhhhhhhhhhh...eeeeee..hhhhhhhhhhhh.......hhhhhhhh....eeeee....hhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhhh....eeeeeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee............eeeeeee....eeeeeee.............eeeeee...eeeee............eeeee....eeeee......hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3u3x D  26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAELAIRAmQHGKDVLVDKPGmTSFDQLAKLRRVQAETGRIFSILYSEHFESPATVKAGELVAAGAIGEVVHIVGLGPHRLRRETRPDWFFRRADYGGILTDIASHQCEQFLFFTGVNDATVLSASVGNQSVPDAPELQDTGSIHLSTGRTTGmIHVNWLTPEGmPTWGDGRLFIVGTSGTIEVRKTVDLAGREGGNHLFLADRNGVEHIDCSRVDLPFGRQFLADIRDRTETAmPQERCFKAmELALQAQAIAE 355
                                    35        45        55        65        75        85        95       105   |   115      |125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355
                                                                                                             109-MSE      122-MSE                                                                                                                             254-MSE    265-MSE                                                               335-MSE  344-MSE       


Chain G from PDB  Type:PROTEIN  Length:330
 aligned with Q92T66_RHIME | Q92T66 from UniProtKB/TrEMBL  Length:338

    Alignment length:330
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332
         Q92T66_RHIME     3 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFSILYSEHFESPATVKAGELVAAGAIGEVVHIVGLGPHRLRRETRPDWFFRRADYGGILTDIASHQCEQFLFFTGVNDATVLSASVGNQSVPDAPELQDTGSIHLSTGRTTGMIHVNWLTPEGMPTWGDGRLFIVGTSGTIEVRKTVDLAGREGGNHLFLADRNGVEHIDCSRVDLPFGRQFLADIRDRTETAMPQERCFKAMELALQAQAIAE 332
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee.....hhhhhhhhhhhh..eeeeee..hhhhhhhhhhhh.......hhhhhhh.....eeee..hhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhh.....eeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee............eeeeeee....eeeeeee.............eeeeee...eeeee............eeeeee..eeeeee......hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3u3x G  26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAELAIRAmQHGKDVLVDKPGmTSFDQLAKLRRVQAETGRIFSILYSEHFESPATVKAGELVAAGAIGEVVHIVGLGPHRLRRETRPDWFFRRADYGGILTDIASHQCEQFLFFTGVNDATVLSASVGNQSVPDAPELQDTGSIHLSTGRTTGmIHVNWLTPEGmPTWGDGRLFIVGTSGTIEVRKTVDLAGREGGNHLFLADRNGVEHIDCSRVDLPFGRQFLADIRDRTETAmPQERCFKAmELALQAQAIAE 355
                                    35        45        55        65        75        85        95       105   |   115      |125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355
                                                                                                             109-MSE      122-MSE                                                                                                                             254-MSE    265-MSE                                                               335-MSE  344-MSE       


Chain J from PDB  Type:PROTEIN  Length:330
 aligned with Q92T66_RHIME | Q92T66 from UniProtKB/TrEMBL  Length:338

    Alignment length:330
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332
         Q92T66_RHIME     3 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFSILYSEHFESPATVKAGELVAAGAIGEVVHIVGLGPHRLRRETRPDWFFRRADYGGILTDIASHQCEQFLFFTGVNDATVLSASVGNQSVPDAPELQDTGSIHLSTGRTTGMIHVNWLTPEGMPTWGDGRLFIVGTSGTIEVRKTVDLAGREGGNHLFLADRNGVEHIDCSRVDLPFGRQFLADIRDRTETAMPQERCFKAMELALQAQAIAE 332
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee..hhhhhhhhhhhhhh.eeeeee..hhhhhhhhhhhh.......hhhhhhhh....eeeee.hhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhhh....eeeeeeeee...hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeee............eeeeeee....eeeeeee.............eeeeee...eeeee............eeeee....eeeee......hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3u3x J  26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAELAIRAmQHGKDVLVDKPGmTSFDQLAKLRRVQAETGRIFSILYSEHFESPATVKAGELVAAGAIGEVVHIVGLGPHRLRRETRPDWFFRRADYGGILTDIASHQCEQFLFFTGVNDATVLSASVGNQSVPDAPELQDTGSIHLSTGRTTGmIHVNWLTPEGmPTWGDGRLFIVGTSGTIEVRKTVDLAGREGGNHLFLADRNGVEHIDCSRVDLPFGRQFLADIRDRTETAmPQERCFKAmELALQAQAIAE 355
                                    35        45        55        65        75        85        95       105   |   115      |125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355
                                                                                                             109-MSE      122-MSE                                                                                                                             254-MSE    265-MSE                                                               335-MSE  344-MSE       


Chain M from PDB  Type:PROTEIN  Length:330
 aligned with Q92T66_RHIME | Q92T66 from UniProtKB/TrEMBL  Length:338

    Alignment length:330
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332
         Q92T66_RHIME     3 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFSILYSEHFESPATVKAGELVAAGAIGEVVHIVGLGPHRLRRETRPDWFFRRADYGGILTDIASHQCEQFLFFTGVNDATVLSASVGNQSVPDAPELQDTGSIHLSTGRTTGMIHVNWLTPEGMPTWGDGRLFIVGTSGTIEVRKTVDLAGREGGNHLFLADRNGVEHIDCSRVDLPFGRQFLADIRDRTETAMPQERCFKAMELALQAQAIAE 332
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee..hhhhhhhhhhhhhh.eeeeee..hhhhhhhhhhhh...eee.hhhhhhhh....eeeee.hhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhh.....eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee............eeeeeee....eeeeeee.............eeeeee...eeeee............eeeee....eeeee......hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3u3x M  26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAELAIRAmQHGKDVLVDKPGmTSFDQLAKLRRVQAETGRIFSILYSEHFESPATVKAGELVAAGAIGEVVHIVGLGPHRLRRETRPDWFFRRADYGGILTDIASHQCEQFLFFTGVNDATVLSASVGNQSVPDAPELQDTGSIHLSTGRTTGmIHVNWLTPEGmPTWGDGRLFIVGTSGTIEVRKTVDLAGREGGNHLFLADRNGVEHIDCSRVDLPFGRQFLADIRDRTETAmPQERCFKAmELALQAQAIAE 355
                                    35        45        55        65        75        85        95       105   |   115      |125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355
                                                                                                             109-MSE      122-MSE                                                                                                                             254-MSE    265-MSE                                                               335-MSE  344-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3U3X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3U3X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3U3X)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,D,G,J,M   (Q92T66_RHIME | Q92T66)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ACT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Arg D:183 - Glu D:184   [ RasMol ]  
    Gly A:296 - Asn A:297   [ RasMol ]  
    Gly G:296 - Asn G:297   [ RasMol ]  
    Gly J:296 - Asn J:297   [ RasMol ]  
    Gly M:296 - Asn M:297   [ RasMol ]  
    Leu G:290 - Ala G:291   [ RasMol ]  
    Leu M:290 - Ala M:291   [ RasMol ]  
    Lys A:119 - Pro A:120   [ RasMol ]  
    Lys D:119 - Pro D:120   [ RasMol ]  
    Lys G:119 - Pro G:120   [ RasMol ]  
    Lys J:119 - Pro J:120   [ RasMol ]  
    Lys M:119 - Pro M:120   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3u3x
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q92T66_RHIME | Q92T66
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  1.-.-.-
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q92T66_RHIME | Q92T66
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3U3X)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3U3X)