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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SELENOMETHIONINE DERIVATIVE OF TABLYSIN-15
 
Authors :  J. F. Andersen, X. Xu, J. M. Ribeiro
Date :  06 Oct 11  (Deposition) - 15 Feb 12  (Release) - 17 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.57
Chains :  Asym./Biol. Unit :  C
Keywords :  Cap Domain, Alphavbeta3 Integrin, Salivary Gland, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Xu, I. M. Francischetti, R. Lai, J. M. Ribeiro, J. F. Andersen
Structure Of Protein Having Inhibitory Disintegrin And Leukotriene Scavenging Functions Contained In Single Domain
J. Biol. Chem. V. 287 10967 2012
PubMed-ID: 22311975  |  Reference-DOI: 10.1074/JBC.M112.340471

(-) Compounds

Molecule 1 - TABLYSIN 15
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET17B
    Expression System Strain: BL21(DE3)PLYSE
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 24-255
    Organism Scientific: TABANUS YAO
    Organism Taxid: 485572

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
1CIT2Ligand/IonCITRIC ACID
2MSE1Mod. Amino AcidSELENOMETHIONINE
3PLM1Ligand/IonPALMITIC ACID
4PR1Ligand/IonPRASEODYMIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS C:46 , HIS C:53BINDING SITE FOR RESIDUE PLM C 233
2AC2SOFTWAREGLU C:34 , CIT C:235 , CIT C:236 , HOH C:371 , HOH C:381BINDING SITE FOR RESIDUE PR C 234
3AC3SOFTWAREGLU C:34 , LEU C:36 , LYS C:37 , ARG C:40 , LYS C:217 , PR C:234 , CIT C:236 , HOH C:347 , HOH C:371 , HOH C:381 , HOH C:399 , HOH C:430BINDING SITE FOR RESIDUE CIT C 235
4AC4SOFTWAREGLU C:34 , LYS C:81 , PR C:234 , CIT C:235 , HOH C:381 , HOH C:392 , HOH C:429 , HOH C:430BINDING SITE FOR RESIDUE CIT C 236

(-) SS Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1C:4 -C:17
2C:8 -C:94
3C:26 -C:87
4C:169 -C:186
5C:209 -C:220

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3U3L)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3U3L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3U3L)

(-) Exons   (0, 0)

(no "Exon" information available for 3U3L)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain C from PDB  Type:PROTEIN  Length:230
 aligned with F8QQG5_TABYA | F8QQG5 from UniProtKB/TrEMBL  Length:255

    Alignment length:232
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253  
         F8QQG5_TABYA    24 VNYCRLPCRGDNYHVGCGEPAYAQECGQSPRTRELLKEHRNEILSKINDVRDHVAKGSWGLPVAARMKVVVWDAELAGLAKRHTKGCVGETHACRNTERFWLPGQLNFKYSGDKLPRIKELIDDAVKKGHLQKHNITREIIGNYRENGPNGDVKELALAISDRVTAVGCGLTTWQDGAKARALLTCNFSSQNTRGRPVYKIGNSPGEKCIEKDETYKNLCPATEPIDPNKSN 255
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh................hhhhh...ee...hhhhhhhhhhhhhhhhhhhhh..............eehhhhhhhhhhhhh..................eeeeeeeee....hhhhhhhhhhhhhhhhhhh.hhhhhhh.....--..hhhhhhhh.....eeeeeeeeeee..eeeeeeeeee............................................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3u3l C   1 VNYCRLPCRGDNYHVGCGEPAYAQECGQSPRTRELLKEHRNEILSKINDVRDHVAKGSWGLPVAARmKVVVWDAELAGLAKRHTKGCVGETHACRNTERFWLPGQLNFKYSGDKLPRIKELIDDAVKKGHLQKHNITREIIENYRENG--GDVKELALAISDRVTAVGCGLTTWEDGAKARALLTCNFSSQNTRGRPVYKIGNSPGEKCIEKDETYKNLCSATEPIDPNKSN 232
                                    10        20        30        40        50        60      | 70        80        90       100       110       120       130       140       | -|      160       170       180       190       200       210       220       230  
                                                                                             67-MSE                                                                          148  |                                                                                 
                                                                                                                                                                                151
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3U3L)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3U3L)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3U3L)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3U3L)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        F8QQG5_TABYA | F8QQG5: 3u3n 3u3u

(-) Related Entries Specified in the PDB File

3u3n 3u3u