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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE HMUY_LIKE HEME BINDING PROTEIN (BVU_2192) FROM BACTEROIDES VULGATUS ATCC 8482 AT 2.12 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  30 Sep 11  (Deposition) - 25 Jan 12  (Release) - 25 Jan 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.12
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Transport, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Heme-Binding Protein, Heme Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Hmuy_like Heme Binding Protein (Bvu_2192) From Bacteroides Vulgatus Atcc 8482 At 2. 12 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE HMUY_LIKE HEME BINDING PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BVU_2192
    Organism Scientific: BACTEROIDES VULGATUS
    Organism Taxid: 435590
    Strain: ATCC 8482

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 36)

Asymmetric Unit (5, 36)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL8Ligand/IonGLYCEROL
3MSE18Mod. Amino AcidSELENOMETHIONINE
4SO48Ligand/IonSULFATE ION
5UNL1Ligand/IonUNKNOWN LIGAND
Biological Unit 1 (4, 70)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL16Ligand/IonGLYCEROL
3MSE36Mod. Amino AcidSELENOMETHIONINE
4SO416Ligand/IonSULFATE ION
5UNL2Ligand/IonUNKNOWN LIGAND

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:44 , TRP A:133 , TYR A:156 , HOH A:380 , HOH A:406BINDING SITE FOR RESIDUE SO4 A 302
02AC2SOFTWARETYR A:55 , ASN A:202 , ALA A:203 , GOL A:315 , HOH A:368 , ARG B:62BINDING SITE FOR RESIDUE SO4 A 304
03AC3SOFTWARETRP A:64 , PHE A:66 , GLU A:86 , LYS A:100 , HOH A:507BINDING SITE FOR RESIDUE SO4 A 307
04AC4SOFTWARETYR A:61 , ARG A:96 , TYR A:97 , TYR A:176 , GOL A:317 , HOH A:493BINDING SITE FOR RESIDUE SO4 A 308
05AC5SOFTWAREVAL A:74 , SER A:76 , HOH A:358BINDING SITE FOR RESIDUE SO4 A 309
06AC6SOFTWARETHR A:101 , ALA A:103 , ASP A:131 , TYR A:156 , HOH A:383 , HOH A:385BINDING SITE FOR RESIDUE GOL A 311
07AC7SOFTWAREGLU A:39 , ILE A:43 , ARG A:44 , SO4 A:304 , HOH A:497 , HOH A:549BINDING SITE FOR RESIDUE GOL A 315
08AC8SOFTWAREHIS A:50 , PRO A:217 , PHE A:218 , GLU A:219 , HOH A:550 , HOH A:592BINDING SITE FOR RESIDUE GOL A 316
09AC9SOFTWAREHIS A:95 , ARG A:96 , ASP A:98 , LYS A:137 , ALA A:139 , SO4 A:308 , HOH A:351BINDING SITE FOR RESIDUE GOL A 317
10BC1SOFTWARETHR B:135 , ALA B:136BINDING SITE FOR RESIDUE CL B 301
11BC2SOFTWARETYR B:61 , ARG B:96 , TYR B:97 , LYS B:169 , TYR B:176 , LYS B:207 , GOL B:310 , HOH B:509BINDING SITE FOR RESIDUE SO4 B 303
12BC3SOFTWAREARG A:62 , TYR B:55 , ASN B:119 , ASN B:202 , ALA B:203 , HOH B:338 , HOH B:543BINDING SITE FOR RESIDUE SO4 B 305
13BC4SOFTWARETRP B:64 , PHE B:66 , GLU B:86 , LYS B:100 , MSE B:153BINDING SITE FOR RESIDUE SO4 B 306
14BC5SOFTWAREHIS B:95 , ARG B:96 , TYR B:97 , ASP B:98 , LYS B:137 , ALA B:139 , SO4 B:303 , HOH B:413BINDING SITE FOR RESIDUE GOL B 310
15BC6SOFTWARETHR B:101 , ALA B:103 , ASP B:131 , TYR B:156 , HOH B:374 , HOH B:411BINDING SITE FOR RESIDUE GOL B 312
16BC7SOFTWARETYR B:156 , HOH B:575BINDING SITE FOR RESIDUE GOL B 313
17BC8SOFTWAREASP B:60 , ARG B:62 , ARG B:63 , ASN B:78BINDING SITE FOR RESIDUE GOL B 314

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3U22)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Mse A:172 -Pro A:173
2Tyr A:216 -Pro A:217
3Mse B:172 -Pro B:173
4Tyr B:216 -Pro B:217

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3U22)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3U22)

(-) Exons   (0, 0)

(no "Exon" information available for 3U22)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:182
 aligned with A6L2D9_BACV8 | A6L2D9 from UniProtKB/TrEMBL  Length:220

    Alignment length:182
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218  
         A6L2D9_BACV8    39 ELGFIRTDPSTHSGTIYIDATDYRRWTFIDFHTQKVDSVNVTDSEQKEPEEWDIAVHRYDVKTNAGAVLETGFTGFSALRNADAMPEGAYVEDVWTTAKIAIDMSGMMDGNIVYMESYYNEELSKWLNVDKSNMPPTYTLSNKVYMVKLKDGTYAAVRLTNYMNASGVKGFMTIDYIYPFEL 220
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee.....eeeeee....eeeeee.............eeee..eeee...eeee....hhhhhhh.........ee.eeeeeeeeee.........eeeeeee..hhhh.eeee......eeee....eeee.....eeeeeeeeee.....eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3u22 A  39 ELGFIRTDPSTHSGTIYIDATDYRRWTFIDFHTQKVDSVNVTDSEQKEPEEWDIAVHRYDVKTNAGAVLETGFTGFSALRNADAmPEGAYVEDVWTTAKIAIDmSGmmDGNIVYmESYYNEELSKWLNVDKSNmPPTYTLSNKVYmVKLKDGTYAAVRLTNYmNASGVKGFmTIDYIYPFEL 220
                                    48        58        68        78        88        98       108       118    |  128       138   |  |148    |  158       168   |   178     | 188       198  |    208 |     218  
                                                                                                              123-MSE            142-MSE      |                172-MSE     184-MSE          201-MSE  210-MSE      
                                                                                                                                    145-MSE   |                                                                   
                                                                                                                                     146-MSE  |                                                                   
                                                                                                                                            153-MSE                                                               


Chain B from PDB  Type:PROTEIN  Length:182
 aligned with A6L2D9_BACV8 | A6L2D9 from UniProtKB/TrEMBL  Length:220

    Alignment length:182
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218  
         A6L2D9_BACV8    39 ELGFIRTDPSTHSGTIYIDATDYRRWTFIDFHTQKVDSVNVTDSEQKEPEEWDIAVHRYDVKTNAGAVLETGFTGFSALRNADAMPEGAYVEDVWTTAKIAIDMSGMMDGNIVYMESYYNEELSKWLNVDKSNMPPTYTLSNKVYMVKLKDGTYAAVRLTNYMNASGVKGFMTIDYIYPFEL 220
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeehhh.eeeeeee.....eeeeee....eeeeee.............eeee..eeee...eeee....hhhhhh..........ee.eeeeeeeeee..hhhhh..eeeeeee..hhhh.eeee......eeee....eeee.....eeeeeeeeee.....eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3u22 B  39 ELGFIRTDPSTHSGTIYIDATDYRRWTFIDFHTQKVDSVNVTDSEQKEPEEWDIAVHRYDVKTNAGAVLETGFTGFSALRNADAmPEGAYVEDVWTTAKIAIDmSGmmDGNIVYmESYYNEELSKWLNVDKSNmPPTYTLSNKVYmVKLKDGTYAAVRLTNYmNASGVKGFmTIDYIYPFEL 220
                                    48        58        68        78        88        98       108       118    |  128       138   |  |148    |  158       168   |   178     | 188       198  |    208 |     218  
                                                                                                              123-MSE            142-MSE      |                172-MSE     184-MSE          201-MSE  210-MSE      
                                                                                                                                    145-MSE   |                                                                   
                                                                                                                                     146-MSE  |                                                                   
                                                                                                                                            153-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3U22)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3U22)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3U22)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3U22)

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