3U1R - JenaLib

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:186 , HIS A:190 , HIS A:196 , TYR A:226 , HOH A:801	BINDING SITE FOR RESIDUE ZN A 600
2	AC2	SOFTWARE	ASP A:66 , ASN A:68 , ASP A:70 , VAL A:72 , ASN A:74 , ASP A:131	BINDING SITE FOR RESIDUE CA A 700
3	AC3	SOFTWARE	ARG A:267 , GLY A:269 , THR A:271 , ASP A:299 , GLY A:301 , ASP A:304	BINDING SITE FOR RESIDUE CA A 701
4	AC4	SOFTWARE	GLY A:302 , ASP A:304 , THR A:341 , GLU A:343 , HOH A:802 , HOH A:815	BINDING SITE FOR RESIDUE CA A 702
5	AC5	SOFTWARE	GLY A:348 , GLY A:350 , ASP A:352 , GLY A:365 , ALA A:367 , ASP A:370	BINDING SITE FOR RESIDUE CA A 703
6	AC6	SOFTWARE	GLY A:366 , GLY A:368 , ASP A:370 , GLY A:383 , SER A:385 , ASP A:388	BINDING SITE FOR RESIDUE CA A 704
7	AC7	SOFTWARE	ASN A:357 , ALA A:359 , ASN A:361 , GLY A:374 , GLY A:376 , ASP A:379	BINDING SITE FOR RESIDUE CA A 705
8	AC8	SOFTWARE	GLY A:375 , GLY A:377 , ASP A:379 , ASP A:397 , ASP A:404 , HOH A:929	BINDING SITE FOR RESIDUE CA A 706
9	AC9	SOFTWARE	GLY A:384 , GLY A:386 , ASP A:388 , GLN A:410 , ASP A:414 , HOH A:803	BINDING SITE FOR RESIDUE CA A 707

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:456
 aligned with D0VMS8_9FLAO | D0VMS8 from UniProtKB/TrEMBL  Length:480

    Alignment length:461
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479 
         D0VMS8_9FLAO    20 GTSSAFTQVDNFSHFYDRGNHLVNGKPSFTVDQAADQLTRSGASWYDLNGDGVINLSYTFLTSPPPGYASRGLGTFSSFSGLQKEQAKLSLESWADVAKVTFTEGPAARGDDGHMTFANFSASNGGAAFAYLPNSSRKGESWYLINKDYDVNKTPGEGNYGRQTLTHEIGHTLGLSHPGDYNAGNGNPSYRDAVYGEDTRAYSVMSYWSEKNTGQVFTKTGEGAYASAPLLDDIAAVQKLYGANMETRAGDTVYGFNSTADRDYYSATSATDKLIFSVWDGGGNDTLDFSGFSQNQKINLAAGSFSDVGGMTGNVSIAQGVTIENAIGGSGNDLLLGNAASNILKGGAGNDIIYGGGGADKLWGGSGSDTFVYREVSDSTPKAADTLMDFQTGLDKIDLTGITHLSGLNFVNAFTGQAGDAVVSYNQASNAGSLQVDFSGHGVADFLITTVGQVATYDIVA 480
               SCOP domains d3u1ra1 A:20-261 automated matches                                                                                                                                                                                                                d3u1ra2 A:262-480 automated matches                                                                                                                                                                                         SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh.....ee..ee..hhhhhhhhhh..............eeeeeee......hhhhhh.......hhhhhhhhhhhhhhhhhhh.eeeee........eeeeeeee.hhhhh.eee.........eeeee.....hhhhh....hhhhhhhhhhhhhhh........-----..hhhhh...............hhhhhh...............hhhhhhhhhhhhh..........eee......hhhhh.........eee.......eee........eee.....ee........eee.......eee......eee......eee......eee......eee......eee..hhhhh.....eee........eeehhhhhh....ee.........eeeeeeehhh.eeeeeee........eeeeee...hhh.ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3u1r A  20 GTSSAFTQVDNFSHFYDRGNHLVNGKPSFTVDQAADQLTRSGASWYDLNGDGVINLSYTFLTSPPPGYASRGLGTFSSFSGLQKEQAKLSLESWADVAKVTFTEGPAARGDDGHMTFANFSASNGGAAFAYLPNSSRKGESWYLINKDYDVNKTPGEGNYGRQTLTHEIGHTLGLSHPGDY-----NPSYRDAVYGEDTRAYSVMSYWSEKNTGQVFTKTGEGAYASAPLLDDIAAVQKLYGANMETRAGDTVYGFNSTADRDYYSATSATDKLIFSVWDGGGNDTLDFSGFSQNQKINLAAGSFSDVGGMTGNVSIAQGVTIENAIGGSGNDLLLGNAASNILKGGAGNDIIYGGGGADKLWGGSGSDTFVYREVSDSTPKAADTLMDFQTGLDKIDLTGITHLSGLNFVNAFTGQAGDAVVSYNQASNAGSLQVDFSGHGVADFLITTVGQVATYDIVA 480
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199|     |209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479 
                                                                                                                                                                                                              200   206

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (D0VMS8_9FLAO | D0VMS8)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004222	metalloendopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008237	metallopeptidase activity	Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

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	Cis Peptide Bonds
		Glu A:241 - Gly A:242	[ RasMol ]

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	3u1r
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	D0VMS8_9FLAO \| D0VMS8
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 9)

Sites (9, 9)