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(-) Description

Title :  CRYSTAL STRUCTURE OF AN ACYL-COA THIOESTERASE II TESB2 FROM MYCOBACTERIUM MARINUM
 
Authors :  T. L. Arakaki, B. L. Staker, M. C. Clifton, B. Sankaran, Seattle Struct Genomics Center For Infectious Disease (Ssgcid)
Date :  28 Sep 11  (Deposition) - 05 Oct 11  (Release) - 25 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Biol. Unit 3:  A,B  (2x)
Keywords :  Structural Genomics, Ssgcid, Seattle Structural Genomics Center For Infectious Disease, Acyl-Coa Thioesterase Ii, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
PubMed-ID: 25613812  |  Reference-DOI: 10.1016/J.TUBE.2014.12.003

(-) Compounds

Molecule 1 - ACYL-COA THIOESTERASE II TESB2
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: AVA0421
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TESB2, MMAR_2095
    Organism Scientific: MYCOBACTERIUM MARINUM
    Organism Taxid: 216594
    Strain: ATCC BAA-535 / M

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB
Biological Unit 3 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2NA3Ligand/IonSODIUM ION
3SO48Ligand/IonSULFATE ION
Biological Unit 1 (2, 9)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2NA-1Ligand/IonSODIUM ION
3SO48Ligand/IonSULFATE ION
Biological Unit 2 (2, 18)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2NA-1Ligand/IonSODIUM ION
3SO416Ligand/IonSULFATE ION
Biological Unit 3 (2, 18)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2NA-1Ligand/IonSODIUM ION
3SO416Ligand/IonSULFATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:173BINDING SITE FOR RESIDUE SO4 A 282
02AC2SOFTWAREGLN A:11 , VAL A:14 , ARG A:78 , HOH A:300BINDING SITE FOR RESIDUE SO4 A 283
03AC3SOFTWAREGLY A:226 , PHE A:227BINDING SITE FOR RESIDUE GOL A 284
04AC4SOFTWARESO4 B:283BINDING SITE FOR RESIDUE NA A 285
05AC5SOFTWAREVAL A:46 , VAL A:49 , PRO A:51 , HOH A:312BINDING SITE FOR RESIDUE NA A 286
06AC6SOFTWAREARG B:80 , GLY B:83 , SER B:84 , PHE B:85 , NA B:288 , HOH B:300BINDING SITE FOR RESIDUE SO4 B 282
07AC7SOFTWARESER A:84 , NA A:285 , ARG B:271BINDING SITE FOR RESIDUE SO4 B 283
08AC8SOFTWARELEU B:9 , GLN B:11 , ARG B:47BINDING SITE FOR RESIDUE SO4 B 284
09AC9SOFTWAREHIS A:95 , GLN B:11 , ARG B:78 , HOH B:307 , HOH B:341BINDING SITE FOR RESIDUE SO4 B 285
10BC1SOFTWARELYS A:164 , HIS A:250 , LYS A:252 , LYS B:164 , HIS B:250 , LYS B:252 , HOH B:320BINDING SITE FOR RESIDUE SO4 B 286
11BC2SOFTWAREHIS A:59 , MET A:102 , HIS B:59 , MET B:102 , GLY B:103BINDING SITE FOR RESIDUE SO4 B 287
12BC3SOFTWARESER B:84 , SO4 B:282BINDING SITE FOR RESIDUE NA B 288

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3U0A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3U0A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3U0A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3U0A)

(-) Exons   (0, 0)

(no "Exon" information available for 3U0A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:256
 aligned with B2HN47_MYCMM | B2HN47 from UniProtKB/TrEMBL  Length:281

    Alignment length:275
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271     
         B2HN47_MYCMM     2 AIEEILDLEQLEVNIYRGSVFSPESGFLQRTFGGHVAGQSLVSAVRTVDPRYQVHSLHGYFLRSGDAQEPTVFLVERTRDGGSFVTRRVNAVQHGEVIFSMGASFQTAQNGISHQDAMPAAPPPDDLPGLRSVRVFDDAGFRQFEEWDVRIVPRDLLAPLPGKASQQQVWFRHRDPLPDDPVLHICALAYMSDLTLLGSAQVTHLAEREHLQVASLDHAMWFMRGFRADEWLLYDQSSPSAGGGRALTHGKIFTQGGELVAAVMQEGLTRYPSGY 276
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh.eeee..eeee..-------.hhhhhhhhhhhhhhhhhhh.....eeeeeeeee.........eeeeeeeeee...eeeeeeeeee..eeeeeeeeeee.......ee.......hhhhh..------------.....eeeee.hhhhh........eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhh....hhhhheeee.eeeeee.........eeeeeeeeeee..eeeeeeeeee....eeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3u0a A   2 AIEEILDLEQLEVNIYRGSV-------LQRTFGGHVAGQSLVSAVRTVDPRYQVHSLHGYFLRSGDAQEPTVFLVERTRDGGSFVTRRVNAVQHGEVIFSMGASFQTAQNGISHQDAMPAAPPPDDLPG------------RQFEEWDVRIVPRDLLAPLPGKASQQQVWFRHRDPLPDDPVLHICALAYMSDLTLLGSAQVTHLAEREHLQVASLDHAMWFMRGFRADEWLLYDQSSPSAGGGRALTHGKIFTQGGELVAAVMQEGLTRYPSGY 276
                                    11        21       |31        41        51        61        71        81        91       101       111       121        |-         - |     151       161       171       181       191       201       211       221       231       241       251       261       271     
                                              21      29                                                                                                  130          143                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:252
 aligned with B2HN47_MYCMM | B2HN47 from UniProtKB/TrEMBL  Length:281

    Alignment length:278
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270        
         B2HN47_MYCMM     1 MAIEEILDLEQLEVNIYRGSVFSPESGFLQRTFGGHVAGQSLVSAVRTVDPRYQVHSLHGYFLRSGDAQEPTVFLVERTRDGGSFVTRRVNAVQHGEVIFSMGASFQTAQNGISHQDAMPAAPPPDDLPGLRSVRVFDDAGFRQFEEWDVRIVPRDLLAPLPGKASQQQVWFRHRDPLPDDPVLHICALAYMSDLTLLGSAQVTHLAEREHLQVASLDHAMWFMRGFRADEWLLYDQSSPSAGGGRALTHGKIFTQGGELVAAVMQEGLTRYPSGYQP 278
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh..eeee..eeee.-----------.hhhhhhhhhhhhhhh.....eeeeeeeeee.........eeeeeeeeee...eeeeeeeeee..eeeeeeeeeeee......ee.........--....-------------...eeeee.hhhhh........eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhh.hhhhh...eeee.eeeeee.........eeeeeeeeeee..eeeeeeeeee....eeeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3u0a B   1 MAIEEILDLEQLEVNIYRGS-----------TFGGHVAGQSLVSAVRTVDPRYQVHSLHGYFLRSGDAQEPTVFLVERTRDGGSFVTRRVNAVQHGEVIFSMGASFQTAQNGISHQDAMPAAPPP--LPGL-------------FEEWDVRIVPRDLLAPLPGKASQQQVWFRHRDPLPDDPVLHICALAYMSDLTLLGSAQVTHLAEREHLQVASLDHAMWFMRGFRADEWLLYDQSSPSAGGGRALTHGKIFTQGGELVAAVMQEGLTRYPSGYQP 278
                                    10        20         - |      40        50        60        70        80        90       100       110       120    |  130|        -    |  150       160       170       180       190       200       210       220       230       240       250       260       270        
                                              20          32                                                                                          125  |  |           145                                                                                                                                     
                                                                                                                                                         128  |                                                                                                                                                   
                                                                                                                                                            131
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3U0A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3U0A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3U0A)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (B2HN47_MYCMM | B2HN47)
molecular function
    GO:0047617    acyl-CoA hydrolase activity    Catalysis of the reaction: acyl-CoA + H2O = CoA + a carboxylate.
biological process
    GO:0006637    acyl-CoA metabolic process    The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with an acyl group.

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