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(-) Description

Title :  CRYSTAL STRUCTURE OF C. THERMOCELLUM PNKP LIGASE DOMAIN AMP-ADENYLATE
 
Authors :  P. Smith, L. Wang, S. Shuman
Date :  24 Sep 11  (Deposition) - 25 Jan 12  (Release) - 29 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.12
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A (1x),C (1x)
Biol. Unit 2:  A,B  (1x)
Biol. Unit 3:  B (1x),D (1x)
Biol. Unit 4:  C,D  (1x)
Keywords :  Dna Ligase/Mrna Capping Enzyme, Rna Ligase, Adenylyltransferase, Hen1, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Smith, L. K. Wang, P. A. Nair, S. Shuman
The Adenylyltransferase Domain Of Bacterial Pnkp Defines A Unique Rna Ligase Family.
Proc. Natl. Acad. Sci. Usa V. 109 2296 2012
PubMed-ID: 22308407  |  Reference-DOI: 10.1073/PNAS.1116827109

(-) Compounds

Molecule 1 - POLYNUCLEOTIDE 2',3'-CYCLIC PHOSPHATE PHOSPHODIESTERASE / POLYNUCLEOTIDE 5'-HYDROXYL-KINASE / POLYNUCLEOTIDE 3'-PHOSPHATASE
    Chains: A, B, C, D
    EC Number: 6.5.1.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28B-SMT3
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: NUCLEOTIDE LIGASE
    Gene: CTHE_2768
    Organism Scientific: CLOSTRIDIUM THERMOCELLUM
    Organism Taxid: 203119
    Strain: ATCC 27405

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A (1x) C (1x) 
Biological Unit 2 (1x): AB  
Biological Unit 3 (1x):  B (1x) D (1x)
Biological Unit 4 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 25)

Asymmetric Unit (5, 25)
No.NameCountTypeFull Name
1AMP4Ligand/IonADENOSINE MONOPHOSPHATE
2GOL1Ligand/IonGLYCEROL
3MG4Ligand/IonMAGNESIUM ION
4MPD10Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
5MRD6Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
Biological Unit 1 (4, 7)
No.NameCountTypeFull Name
1AMP1Ligand/IonADENOSINE MONOPHOSPHATE
2GOL1Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
4MPD3Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
5MRD2Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
Biological Unit 2 (4, 12)
No.NameCountTypeFull Name
1AMP2Ligand/IonADENOSINE MONOPHOSPHATE
2GOL1Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
4MPD4Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
5MRD5Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
Biological Unit 3 (3, 5)
No.NameCountTypeFull Name
1AMP1Ligand/IonADENOSINE MONOPHOSPHATE
2GOL-1Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
4MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
5MRD3Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
Biological Unit 4 (3, 9)
No.NameCountTypeFull Name
1AMP2Ligand/IonADENOSINE MONOPHOSPHATE
2GOL-1Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
4MPD6Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
5MRD1Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:529 , GLN A:530 , LYS A:531 , HIS A:532 , ARG A:536 , GLU A:607 , ARG A:687 , PHE A:704 , GLU A:769 , LYS A:774 , LYS A:792 , ARG A:794BINDING SITE FOR RESIDUE AMP A 900
02AC2SOFTWAREGLY A:767 , ILE A:801BINDING SITE FOR RESIDUE MPD A 905
03AC3SOFTWARELEU B:489 , GLY B:567BINDING SITE FOR RESIDUE MPD A 906
04AC4SOFTWAREARG A:551 , PHE A:842 , ASN A:845 , GLU A:846BINDING SITE FOR RESIDUE MPD A 907
05AC5SOFTWARESER A:502 , LYS A:504 , MET A:507 , MET A:809 , GLU A:811 , GLU A:814BINDING SITE FOR RESIDUE MRD A 908
06AC6SOFTWAREARG A:583 , ASP A:733 , ASP A:734 , SER A:735 , ARG D:819BINDING SITE FOR RESIDUE MRD A 909
07AC7SOFTWAREGLU A:684 , ARG A:687 , ILE A:802BINDING SITE FOR RESIDUE GOL A 910
08AC8SOFTWARETHR A:731 , ASP A:734 , ILE A:737BINDING SITE FOR RESIDUE MG A 1000
09AC9SOFTWAREGLU B:529 , GLN B:530 , LYS B:531 , HIS B:532 , ARG B:536 , GLU B:607 , ARG B:687 , PHE B:704 , GLU B:769 , LYS B:774 , LYS B:792 , ARG B:794BINDING SITE FOR RESIDUE AMP B 900
10BC1SOFTWAREASP B:733BINDING SITE FOR RESIDUE MPD B 905
11BC2SOFTWARESER B:502 , LYS B:503 , LYS B:504 , GLU B:505 , GLY B:506 , MET B:507 , GLU B:814BINDING SITE FOR RESIDUE MRD B 907
12BC3SOFTWARETYR B:623 , GLY B:767 , GLY B:768BINDING SITE FOR RESIDUE MRD B 908
13BC4SOFTWARETHR B:731 , ASP B:734 , ILE B:737BINDING SITE FOR RESIDUE MG B 1000
14BC5SOFTWAREGLU C:529 , GLN C:530 , LYS C:531 , HIS C:532 , ARG C:536 , GLU C:607 , ARG C:687 , PHE C:704 , GLU C:769 , LYS C:774 , LYS C:792 , ARG C:794BINDING SITE FOR RESIDUE AMP C 900
15BC6SOFTWAREARG A:631 , LEU A:634 , ARG C:631 , LEU C:634BINDING SITE FOR RESIDUE MPD C 905
16BC7SOFTWARETYR C:623 , GLY C:767 , TYR C:798BINDING SITE FOR RESIDUE MPD C 906
17BC8SOFTWAREGLU C:684 , ARG C:687 , LYS C:688 , TYR C:798 , ILE C:802BINDING SITE FOR RESIDUE MPD C 907
18BC9SOFTWARETHR C:731 , ASP C:734 , ILE C:737BINDING SITE FOR RESIDUE MG C 1000
19CC1SOFTWAREGLU D:529 , GLN D:530 , LYS D:531 , HIS D:532 , ARG D:536 , GLU D:607 , ARG D:687 , PHE D:704 , GLU D:769 , LYS D:774 , LYS D:792 , ARG D:794BINDING SITE FOR RESIDUE AMP D 900
20CC2SOFTWARELEU C:489 , LEU C:859 , LEU D:489 , THR D:566 , GLY D:567BINDING SITE FOR RESIDUE MPD D 905
21CC3SOFTWAREGLU D:684 , ARG D:687 , TYR D:798 , ILE D:802 , PRO D:868BINDING SITE FOR RESIDUE MPD D 906
22CC4SOFTWAREGLY D:767 , ILE D:801BINDING SITE FOR RESIDUE MPD D 907
23CC5SOFTWARELYS B:781 , LYS D:614 , ALA D:615 , TRP D:691BINDING SITE FOR RESIDUE MRD D 908
24CC6SOFTWARETHR D:731 , ASP D:734 , ILE D:737BINDING SITE FOR RESIDUE MG D 1000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3TY9)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu B:646 -Asn B:647
2Arg C:784 -Glu C:785

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3TY9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3TY9)

(-) Exons   (0, 0)

(no "Exon" information available for 3TY9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:376
 aligned with A3DJ38_CLOTH | A3DJ38 from UniProtKB/TrEMBL  Length:870

    Alignment length:393
                                   487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       867   
         A3DJ38_CLOTH   478 VMSRFAADPHWLIYLPPTMSPCETSKKEGMLEHPIEAFEYFRTRGVGKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGTAGICYTRTGRHFFDDMQLEAELIDRVRKVLDKSGFWGDFNTDWVCLDCELMPWSAKAQKLLEEQYSAVGISGRVVLDEAVKLLKQASLNKTVSFDVSRQTSGKNADINELLQRFTERSEMMQKYVEAYRKYCWPVNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNHILVDVTDAESVDKGIKWWEDLTASGGEGMVVKPYDFIVKNGRELLQPAVKCRGREYLRIIYGPEYTMDENIERLRNRAVGKKRSLALREFSLGMEALERFVRNEPLYRVHECVFGVLALESEPVDPRL 870
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh....................hhhhhhhhhhhh...eeeeee....eeeeeeee.hhhhhhhh........eeee.........hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.---------------.hhhhhhhhhhhhhhhhhhhhhhhhhh......hhh.eeeeeeeeeee..ee....hhhhhhhhhhhhhh..........eeeee..hhhhhhhhhhhhhhhhh....eeeeee.......--......eeeehhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ty9 A 478 SMSRFAADPHWLIYLPPTMSPCETSKKEGMLEHPIEAFEYFRTRGVGKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGTAGICYTRTGRHFFDDMQLEAELIDRVRKVLDKSGFWGDFNTDWVCLDCELMPWSAKAQKLLEEQYSAVGISGRVVLDEAVKLLKQASL---------------NADINELLQRFTERSEMMQKYVEAYRKYCWPVNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNHILVDVTDAESVDKGIKWWEDLTASGGEGMVVKPYDFIVKN--ELLQPAVKCRGREYLRIIYGPEYTMDENIERLRNRAVGKKRSLALREFSLGMEALERFVRNEPLYRVHECVFGVLALESEPVDPRL 870
                                   487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637        |-         -    |  667       677       687       697       707       717       727       737       747       757       767       777    |  787       797       807       817       827       837       847       857       867   
                                                                                                                                                                                                  646             662                                                                                                                     782  |                                                                                     
                                                                                                                                                                                                                                                                                                                                             785                                                                                     


Chain B from PDB  Type:PROTEIN  Length:374
 aligned with A3DJ38_CLOTH | A3DJ38 from UniProtKB/TrEMBL  Length:870

    Alignment length:393
                                   487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       867   
         A3DJ38_CLOTH   478 VMSRFAADPHWLIYLPPTMSPCETSKKEGMLEHPIEAFEYFRTRGVGKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGTAGICYTRTGRHFFDDMQLEAELIDRVRKVLDKSGFWGDFNTDWVCLDCELMPWSAKAQKLLEEQYSAVGISGRVVLDEAVKLLKQASLNKTVSFDVSRQTSGKNADINELLQRFTERSEMMQKYVEAYRKYCWPVNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNHILVDVTDAESVDKGIKWWEDLTASGGEGMVVKPYDFIVKNGRELLQPAVKCRGREYLRIIYGPEYTMDENIERLRNRAVGKKRSLALREFSLGMEALERFVRNEPLYRVHECVFGVLALESEPVDPRL 870
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh....................hhhhhhhhhhhh...eeeeee....eeeeeeee...hhhhhh........eeee.........hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....----------------.hhhhhhhhhhhhhhhhhhhhhhhhh.....hhh.eeeeeeeeeee..ee....hhhhhhhhhhhhhh..........eeeee....hhhhhhhhhhhhhhh....eeeeee.......---.....eeeehhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ty9 B 478 SMSRFAADPHWLIYLPPTMSPCETSKKEGMLEHPIEAFEYFRTRGVGKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGTAGICYTRTGRHFFDDMQLEAELIDRVRKVLDKSGFWGDFNTDWVCLDCELMPWSAKAQKLLEEQYSAVGISGRVVLDEAVKLLKQASLN----------------DINELLQRFTERSEMMQKYVEAYRKYCWPVNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNHILVDVTDAESVDKGIKWWEDLTASGGEGMVVKPYDFIVKN---LLQPAVKCRGREYLRIIYGPEYTMDENIERLRNRAVGKKRSLALREFSLGMEALERFVRNEPLYRVHECVFGVLALESEPVDPRL 870
                                   487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647         -      |667       677       687       697       707       717       727       737       747       757       767       777    |  787       797       807       817       827       837       847       857       867   
                                                                                                                                                                                                   647              664                                                                                                                   782 786                                                                                    


Chain C from PDB  Type:PROTEIN  Length:376
 aligned with A3DJ38_CLOTH | A3DJ38 from UniProtKB/TrEMBL  Length:870

    Alignment length:393
                                   487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       867   
         A3DJ38_CLOTH   478 VMSRFAADPHWLIYLPPTMSPCETSKKEGMLEHPIEAFEYFRTRGVGKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGTAGICYTRTGRHFFDDMQLEAELIDRVRKVLDKSGFWGDFNTDWVCLDCELMPWSAKAQKLLEEQYSAVGISGRVVLDEAVKLLKQASLNKTVSFDVSRQTSGKNADINELLQRFTERSEMMQKYVEAYRKYCWPVNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNHILVDVTDAESVDKGIKWWEDLTASGGEGMVVKPYDFIVKNGRELLQPAVKCRGREYLRIIYGPEYTMDENIERLRNRAVGKKRSLALREFSLGMEALERFVRNEPLYRVHECVFGVLALESEPVDPRL 870
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.hhhhh.......ee...........hhhhhhhhhhh....eeeeee....eeeeeeee.hhhhhhhh........eeee....ee...hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..--------------.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhh.eeeeeeeeeee..ee....hhhhhhhhhhhhhh..........eeeee..hhhhhhhhhhhhhhhhh....eeeeee.....---.......eeeehhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ty9 C 478 SMSRFAADPHWLIYLPPTMSPCETSKKEGMLEHPIEAFEYFRTRGVGKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGTAGICYTRTGRHFFDDMQLEAELIDRVRKVLDKSGFWGDFNTDWVCLDCELMPWSAKAQKLLEEQYSAVGISGRVVLDEAVKLLKQASLN--------------NADINELLQRFTERSEMMQKYVEAYRKYCWPVNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNHILVDVTDAESVDKGIKWWEDLTASGGEGMVVKPYDFIV---RELLQPAVKCRGREYLRIIYGPEYTMDENIERLRNRAVGKKRSLALREFSLGMEALERFVRNEPLYRVHECVFGVLALESEPVDPRL 870
                                   487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647         -    |  667       677       687       697       707       717       727       737       747       757       767       777  |   |787       797       807       817       827       837       847       857       867   
                                                                                                                                                                                                   647            662                                                                                                                   780 784                                                                                      


Chain D from PDB  Type:PROTEIN  Length:374
 aligned with A3DJ38_CLOTH | A3DJ38 from UniProtKB/TrEMBL  Length:870

    Alignment length:393
                                   487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       867   
         A3DJ38_CLOTH   478 VMSRFAADPHWLIYLPPTMSPCETSKKEGMLEHPIEAFEYFRTRGVGKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGTAGICYTRTGRHFFDDMQLEAELIDRVRKVLDKSGFWGDFNTDWVCLDCELMPWSAKAQKLLEEQYSAVGISGRVVLDEAVKLLKQASLNKTVSFDVSRQTSGKNADINELLQRFTERSEMMQKYVEAYRKYCWPVNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNHILVDVTDAESVDKGIKWWEDLTASGGEGMVVKPYDFIVKNGRELLQPAVKCRGREYLRIIYGPEYTMDENIERLRNRAVGKKRSLALREFSLGMEALERFVRNEPLYRVHECVFGVLALESEPVDPRL 870
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.hhhhh.......ee...........hhhhhhhhhhhh...eeeeee....eeeeeeee.hhhhhhhh........eeee....ee...hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....---------------.hhhhhhhhhhhhhhhhhhhhhhhhh......hhh.eeeeeeeeeee..ee....hhhhhhhhhhhhhh..........eeeee..hhhhhhhhhhhhhhhhhh...eeeeee....----.......eeeehhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ty9 D 478 SMSRFAADPHWLIYLPPTMSPCETSKKEGMLEHPIEAFEYFRTRGVGKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGTAGICYTRTGRHFFDDMQLEAELIDRVRKVLDKSGFWGDFNTDWVCLDCELMPWSAKAQKLLEEQYSAVGISGRVVLDEAVKLLKQASLN---------------ADINELLQRFTERSEMMQKYVEAYRKYCWPVNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNHILVDVTDAESVDKGIKWWEDLTASGGEGMVVKPYDFI----RELLQPAVKCRGREYLRIIYGPEYTMDENIERLRNRAVGKKRSLALREFSLGMEALERFVRNEPLYRVHECVFGVLALESEPVDPRL 870
                                   487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647         -     | 667       677       687       697       707       717       727       737       747       757       767       777 |    |787       797       807       817       827       837       847       857       867   
                                                                                                                                                                                                   647             663                                                                                                                 779  784
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3TY9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3TY9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3TY9)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (A3DJ38_CLOTH | A3DJ38)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        A3DJ38_CLOTH | A3DJ38: 3ty5 3ty8 4drf 4e6n 4gp6 4gp7 4j6o 4jst 4jsy 4jt2 4jt4 4mde 4mdf 4qm6 4qm7

(-) Related Entries Specified in the PDB File

3ty5 CTHPNKP ATP BOUND
3ty8 CTHPNKP APO FORM