3TY6 - JenaLib

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Title :   ATP-DEPENDENT PROTEASE HSLV FROM BACILLUS ANTHRACIS STR. AMES

Authors :   Y. Kim, R. Mulligan, K. Kwon, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)

Date :   23 Sep 11 (Deposition) - 05 Oct 11 (Release) - 05 Oct 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F  (2x)

Keywords :   Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Alpha-Beta-Beta-Alpha Sandwich, Peotease, Cytosol, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Kim, R. Mulligan, K Kwon, W. F. Anderson, A. Joachimiak
Atp-Dependent Protease Hslv From Bacillus Anthracis Str. Ames
To Be Published
PubMed: search

Molecule 1 - ATP-DEPENDENT PROTEASE SUBUNIT HSLV
	Chains	:	A, B, C, D, E, F
	EC Number	:	3.4.25.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21 MAGIC
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	BAS3681, BA_3968, GBAA_3968, HSLV
	Organism Common	:	ANTHRAX,ANTHRAX BACTERIUM
	Organism Scientific	:	BACILLUS ANTHRACIS
	Organism Taxid	:	198094
	Strain	:	AMES

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (2x)	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 6)

No.	Name	Count	Type	Full Name
1	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 12)

No.	Name	Count	Type	Full Name
1	SO4	12	Ligand/Ion	SULFATE ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:13 , HIS A:14 , ASN A:15 , GLY A:16 , LYS A:144	BINDING SITE FOR RESIDUE SO4 A 190
2	AC2	SOFTWARE	HIS B:13 , HIS B:14 , ASN B:15 , GLY B:16 , LYS B:144	BINDING SITE FOR RESIDUE SO4 B 190
3	AC3	SOFTWARE	ARG A:80 , HIS C:13 , HIS C:14 , ASN C:15 , HOH C:184	BINDING SITE FOR RESIDUE SO4 C 190
4	AC4	SOFTWARE	HIS E:14 , ASN E:15 , GLY E:16 , HOH E:185 , HOH E:187	BINDING SITE FOR RESIDUE SO4 E 190
5	AC5	SOFTWARE	ASN C:134 , ASN E:134 , TYR E:135 , HOH E:186 , ALA F:31	BINDING SITE FOR RESIDUE SO4 E 191
6	AC6	SOFTWARE	HIS F:14 , ASN F:15 , LYS F:144	BINDING SITE FOR RESIDUE SO4 F 190

(no "SS Bond" information available for 3TY6)

(no "Cis Peptide Bond" information available for 3TY6)

(no "SAP(SNP)/Variant" information available for 3TY6)

Asymmetric Unit (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEASOME_BETA_2	PS51476	Proteasome beta-type subunit profile.	HSLV_BACAN	6-180	6	A:6-180 B:6-180 C:6-180 D:6-180 E:6-180 F:6-180

Biological Unit 1 (1, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEASOME_BETA_2	PS51476	Proteasome beta-type subunit profile.	HSLV_BACAN	6-180	12	A:6-180 B:6-180 C:6-180 D:6-180 E:6-180 F:6-180

(no "Exon" information available for 3TY6)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:178
 aligned with HSLV_BACAN | Q81WK5 from UniProtKB/Swiss-Prot  Length:180

    Alignment length:178
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172        
           HSLV_BACAN     3 NFHATTIFAVHHNGECAMAGDGQVTMGNAVVMKHTARKVRKLFQGKVLAGFAGSVADAFTLFEMFEGKLEEYNGNLQRAAVEMAKQWRGDKMLRQLEAMLIVMDKTTMLLVSGTGEVIEPDDGILAIGSGGNYALSAGRALKQYASEHLTAKQIAKASLEIAGDICVYTNHNIIVEEL 180
               SCOP domains d3ty6a_ A: automated matches                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..eeeeeee..eeeeeee..eee...eeee.....eeeehhhheeeee..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.........eeee....eeee.....ee.....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---PROTEASOME_BETA_2  PDB: A:6-180 UniProt: 6-180                                                                                                                                  PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ty6 A   3 NFHATTIFAVHHNGECAMAGDGQVTMGNAVVMKHTARKVRKLFQGKVLAGFAGSVADAFTLFEMFEGKLEEYNGNLQRAAVEMAKQWRGDKMLRQLEAMLIVMDKTTMLLVSGTGEVIEPDDGILAIGSGGNYALSAGRALKQYASEHLTAKQIAKASLEIAGDICVYTNHNIIVEEL 180
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain B from PDB  Type:PROTEIN  Length:178
 aligned with HSLV_BACAN | Q81WK5 from UniProtKB/Swiss-Prot  Length:180

    Alignment length:178
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172        
           HSLV_BACAN     3 NFHATTIFAVHHNGECAMAGDGQVTMGNAVVMKHTARKVRKLFQGKVLAGFAGSVADAFTLFEMFEGKLEEYNGNLQRAAVEMAKQWRGDKMLRQLEAMLIVMDKTTMLLVSGTGEVIEPDDGILAIGSGGNYALSAGRALKQYASEHLTAKQIAKASLEIAGDICVYTNHNIIVEEL 180
               SCOP domains d3ty6b_ B: automated matches                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee..eeeeeee...ee...ee.......eeee....eeeee..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh....eeee....eeee.....ee.....eeeee.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh......eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---PROTEASOME_BETA_2  PDB: B:6-180 UniProt: 6-180                                                                                                                                  PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ty6 B   3 NFHATTIFAVHHNGECAMAGDGQVTMGNAVVMKHTARKVRKLFQGKVLAGFAGSVADAFTLFEMFEGKLEEYNGNLQRAAVEMAKQWRGDKMLRQLEAMLIVMDKTTMLLVSGTGEVIEPDDGILAIGSGGNYALSAGRALKQYASEHLTAKQIAKASLEIAGDICVYTNHNIIVEEL 180
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain C from PDB  Type:PROTEIN  Length:176
 aligned with HSLV_BACAN | Q81WK5 from UniProtKB/Swiss-Prot  Length:180

    Alignment length:176
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174      
           HSLV_BACAN     5 HATTIFAVHHNGECAMAGDGQVTMGNAVVMKHTARKVRKLFQGKVLAGFAGSVADAFTLFEMFEGKLEEYNGNLQRAAVEMAKQWRGDKMLRQLEAMLIVMDKTTMLLVSGTGEVIEPDDGILAIGSGGNYALSAGRALKQYASEHLTAKQIAKASLEIAGDICVYTNHNIIVEEL 180
               SCOP domains d3ty6c_ C: automated matches                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..eeeeeee..eee...eeee.....eeee....eeeee..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.........eeee....eeee.....ee.....eeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -PROTEASOME_BETA_2  PDB: C:6-180 UniProt: 6-180                                                                                                                                  PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ty6 C   5 HATTIFAVHHNGECAMAGDGQVTMGNAVVMKHTARKVRKLFQGKVLAGFAGSVADAFTLFEMFEGKLEEYNGNLQRAAVEMAKQWRGDKMLRQLEAMLIVMDKTTMLLVSGTGEVIEPDDGILAIGSGGNYALSAGRALKQYASEHLTAKQIAKASLEIAGDICVYTNHNIIVEEL 180
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174

Chain D from PDB  Type:PROTEIN  Length:178
 aligned with HSLV_BACAN | Q81WK5 from UniProtKB/Swiss-Prot  Length:180

    Alignment length:178
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172        
           HSLV_BACAN     3 NFHATTIFAVHHNGECAMAGDGQVTMGNAVVMKHTARKVRKLFQGKVLAGFAGSVADAFTLFEMFEGKLEEYNGNLQRAAVEMAKQWRGDKMLRQLEAMLIVMDKTTMLLVSGTGEVIEPDDGILAIGSGGNYALSAGRALKQYASEHLTAKQIAKASLEIAGDICVYTNHNIIVEEL 180
               SCOP domains d3ty6d_ D: automated matches                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....eeeeee..eee...eeee.....eeee....eeeee..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.........eeee....eeee.....ee.....eeee..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh......eeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---PROTEASOME_BETA_2  PDB: D:6-180 UniProt: 6-180                                                                                                                                  PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ty6 D   3 NFHATTIFAVHHNGECAMAGDGQVTMGNAVVMKHTARKVRKLFQGKVLAGFAGSVADAFTLFEMFEGKLEEYNGNLQRAAVEMAKQWRGDKMLRQLEAMLIVMDKTTMLLVSGTGEVIEPDDGILAIGSGGNYALSAGRALKQYASEHLTAKQIAKASLEIAGDICVYTNHNIIVEEL 180
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain E from PDB  Type:PROTEIN  Length:178
 aligned with HSLV_BACAN | Q81WK5 from UniProtKB/Swiss-Prot  Length:180

    Alignment length:178
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172        
           HSLV_BACAN     3 NFHATTIFAVHHNGECAMAGDGQVTMGNAVVMKHTARKVRKLFQGKVLAGFAGSVADAFTLFEMFEGKLEEYNGNLQRAAVEMAKQWRGDKMLRQLEAMLIVMDKTTMLLVSGTGEVIEPDDGILAIGSGGNYALSAGRALKQYASEHLTAKQIAKASLEIAGDICVYTNHNIIVEEL 180
               SCOP domains d3ty6e_ E: automated matches                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..eeeeeee..eeeeeee..eee...eeee.....eeee....eeeee..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh........eeeee....eeeee....ee.....eeeee.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh......eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---PROTEASOME_BETA_2  PDB: E:6-180 UniProt: 6-180                                                                                                                                  PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ty6 E   3 NFHATTIFAVHHNGECAMAGDGQVTMGNAVVMKHTARKVRKLFQGKVLAGFAGSVADAFTLFEMFEGKLEEYNGNLQRAAVEMAKQWRGDKMLRQLEAMLIVMDKTTMLLVSGTGEVIEPDDGILAIGSGGNYALSAGRALKQYASEHLTAKQIAKASLEIAGDICVYTNHNIIVEEL 180
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain F from PDB  Type:PROTEIN  Length:178
 aligned with HSLV_BACAN | Q81WK5 from UniProtKB/Swiss-Prot  Length:180

    Alignment length:178
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172        
           HSLV_BACAN     3 NFHATTIFAVHHNGECAMAGDGQVTMGNAVVMKHTARKVRKLFQGKVLAGFAGSVADAFTLFEMFEGKLEEYNGNLQRAAVEMAKQWRGDKMLRQLEAMLIVMDKTTMLLVSGTGEVIEPDDGILAIGSGGNYALSAGRALKQYASEHLTAKQIAKASLEIAGDICVYTNHNIIVEEL 180
               SCOP domains d3ty6f_ F: automated matches                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee..eeeeeee..eee...eeee.....eeee....eeeee..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhh...eeee....eeee.....ee.....eeee..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh......eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---PROTEASOME_BETA_2  PDB: F:6-180 UniProt: 6-180                                                                                                                                  PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ty6 F   3 NFHATTIFAVHHNGECAMAGDGQVTMGNAVVMKHTARKVRKLFQGKVLAGFAGSVADAFTLFEMFEGKLEEYNGNLQRAAVEMAKQWRGDKMLRQLEAMLIVMDKTTMLLVSGTGEVIEPDDGILAIGSGGNYALSAGRALKQYASEHLTAKQIAKASLEIAGDICVYTNHNIIVEEL 180
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Ntn hydrolase-like (356)

Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) (352)

Family: Proteasome subunits (222)

Protein domain: automated matches (78)

Bacillus anthracis [TaxId: 198094] (1)

1a	d3ty6a_	A:
1b	d3ty6b_	B:
1c	d3ty6c_	C:
1d	d3ty6d_	D:
1e	d3ty6e_	E:
1f	d3ty6f_	F:

(no "CATH Domain" information available for 3TY6)

(no "Pfam Domain" information available for 3TY6)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (HSLV_BACAN | Q81WK5)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0004298	threonine-type endopeptidase activity	Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
biological process
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0030163	protein catabolic process	The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0051603	proteolysis involved in cellular protein catabolic process	The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
cellular component
	GO:0009376	HslUV protease complex	A protein complex that possesses ATP-dependent protease activity; consists of an ATPase large subunit with homology to other ClpX family ATPases and a peptidase small subunit related to the proteasomal beta-subunits of eukaryotes. In the E. coli complex, a double ring-shaped homohexamer of HslV is capped on each side by a ring-shaped HslU homohexamer.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005839	proteasome core complex	A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3ty6)

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	3ty6
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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Exons (0, 0)

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